Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01270

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01260 and MMP_RS01265 are separated by 81 nucleotidesMMP_RS01265 and MMP_RS01270 are separated by 14 nucleotidesMMP_RS01270 and MMP_RS01275 are separated by 1 nucleotidesMMP_RS01275 and MMP_RS01280 are separated by 125 nucleotides MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465 _RS01260 MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915 _RS01265 MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970 _RS01270 MMP_RS01275: MMP_RS01275 - class III signal peptide-containing protein, at 240,972 to 241,361 _RS01275 MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635 _RS01280 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.228 kb on + strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.397 kb on + strandat 239.454 kb on - strandat 239.454 kb on - strandat 239.482 kb on - strandat 239.482 kb on - strandat 239.483 kb on + strandat 239.485 kb on + strandat 239.486 kb on - strandat 239.499 kb on + strandat 239.512 kb on + strandat 239.544 kb on - strandat 239.544 kb on - strandat 239.546 kb on - strandat 239.546 kb on - strandat 239.546 kb on - strandat 239.547 kb on + strandat 239.804 kb on - strand, within MMP_RS01265at 239.808 kb on + strand, within MMP_RS01265at 239.868 kb on + strand, within MMP_RS01265at 239.869 kb on - strand, within MMP_RS01265at 239.999 kb on - strandat 240.000 kb on + strandat 240.001 kb on - strandat 240.001 kb on - strandat 240.052 kb on + strand, within MMP_RS01270at 240.132 kb on - strand, within MMP_RS01270at 240.166 kb on - strand, within MMP_RS01270at 240.167 kb on + strand, within MMP_RS01270at 240.175 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.209 kb on + strand, within MMP_RS01270at 240.212 kb on - strand, within MMP_RS01270at 240.213 kb on + strand, within MMP_RS01270at 240.213 kb on + strand, within MMP_RS01270at 240.249 kb on - strand, within MMP_RS01270at 240.250 kb on + strand, within MMP_RS01270at 240.311 kb on + strand, within MMP_RS01270at 240.354 kb on - strand, within MMP_RS01270at 240.400 kb on + strand, within MMP_RS01270at 240.415 kb on + strand, within MMP_RS01270at 240.482 kb on + strand, within MMP_RS01270at 240.484 kb on - strand, within MMP_RS01270at 240.510 kb on + strand, within MMP_RS01270at 240.514 kb on + strand, within MMP_RS01270at 240.566 kb on - strand, within MMP_RS01270at 240.601 kb on + strand, within MMP_RS01270at 240.666 kb on - strand, within MMP_RS01270at 240.683 kb on + strand, within MMP_RS01270at 240.688 kb on + strand, within MMP_RS01270at 240.705 kb on - strand, within MMP_RS01270at 240.724 kb on - strand, within MMP_RS01270at 240.884 kb on + strandat 240.884 kb on + strandat 240.934 kb on + strandat 240.969 kb on + strandat 241.047 kb on + strand, within MMP_RS01275at 241.221 kb on + strand, within MMP_RS01275at 241.232 kb on - strand, within MMP_RS01275at 241.235 kb on + strand, within MMP_RS01275at 241.243 kb on + strand, within MMP_RS01275at 241.244 kb on - strand, within MMP_RS01275at 241.383 kb on + strandat 241.400 kb on - strandat 241.407 kb on - strandat 241.408 kb on + strandat 241.414 kb on + strandat 241.429 kb on - strandat 241.429 kb on - strandat 241.429 kb on - strandat 241.430 kb on + strandat 241.430 kb on + strandat 241.431 kb on - strandat 241.435 kb on - strandat 241.451 kb on - strandat 241.465 kb on + strandat 241.486 kb on - strandat 241.502 kb on - strandat 241.502 kb on - strandat 241.511 kb on + strandat 241.691 kb on + strand, within MMP_RS01280at 241.742 kb on - strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.755 kb on - strand, within MMP_RS01280at 241.822 kb on + strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.832 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.866 kb on + strand, within MMP_RS01280at 241.874 kb on - strand, within MMP_RS01280

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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239,228 + MMP_RS01260 0.65 +0.7
239,394 - MMP_RS01260 0.90 +0.1
239,394 - MMP_RS01260 0.90 -0.0
239,394 - MMP_RS01260 0.90 -0.3
239,397 + -0.0
239,454 - +1.8
239,454 - +0.4
239,482 - +1.2
239,482 - -0.1
239,483 + -1.4
239,485 + +1.1
239,486 - +2.3
239,499 + +1.3
239,512 + +0.4
239,544 - -1.2
239,544 - -0.8
239,546 - +0.5
239,546 - -3.5
239,546 - -2.1
239,547 + +1.2
239,804 - MMP_RS01265 0.70 -2.0
239,808 + MMP_RS01265 0.71 -0.9
239,868 + MMP_RS01265 0.87 -1.0
239,869 - MMP_RS01265 0.87 +1.1
239,999 - +2.1
240,000 + -0.4
240,001 - +0.4
240,001 - -2.9
240,052 + MMP_RS01270 0.12 -1.6
240,132 - MMP_RS01270 0.19 -0.7
240,166 - MMP_RS01270 0.23 -1.6
240,167 + MMP_RS01270 0.23 +0.9
240,175 - MMP_RS01270 0.24 -1.2
240,208 - MMP_RS01270 0.27 +1.0
240,208 - MMP_RS01270 0.27 +0.3
240,208 - MMP_RS01270 0.27 -1.0
240,209 + MMP_RS01270 0.27 -0.5
240,212 - MMP_RS01270 0.27 +0.5
240,213 + MMP_RS01270 0.27 -1.7
240,213 + MMP_RS01270 0.27 -1.0
240,249 - MMP_RS01270 0.31 -0.4
240,250 + MMP_RS01270 0.31 -0.5
240,311 + MMP_RS01270 0.37 -0.4
240,354 - MMP_RS01270 0.41 -0.9
240,400 + MMP_RS01270 0.45 -0.4
240,415 + MMP_RS01270 0.47 -1.9
240,482 + MMP_RS01270 0.53 -2.2
240,484 - MMP_RS01270 0.53 -2.5
240,510 + MMP_RS01270 0.56 +1.0
240,514 + MMP_RS01270 0.56 -1.2
240,566 - MMP_RS01270 0.61 -2.4
240,601 + MMP_RS01270 0.64 -0.5
240,666 - MMP_RS01270 0.71 -1.8
240,683 + MMP_RS01270 0.72 -0.9
240,688 + MMP_RS01270 0.73 -0.7
240,705 - MMP_RS01270 0.74 -1.4
240,724 - MMP_RS01270 0.76 -0.0
240,884 + -0.5
240,884 + -3.1
240,934 + +1.3
240,969 + +0.7
241,047 + MMP_RS01275 0.19 -1.5
241,221 + MMP_RS01275 0.64 -0.5
241,232 - MMP_RS01275 0.67 +0.5
241,235 + MMP_RS01275 0.67 +0.1
241,243 + MMP_RS01275 0.69 -1.1
241,244 - MMP_RS01275 0.70 -1.3
241,383 + +0.4
241,400 - -0.8
241,407 - +0.5
241,408 + +0.1
241,414 + +0.7
241,429 - -0.2
241,429 - -1.7
241,429 - +0.7
241,430 + +0.4
241,430 + +0.4
241,431 - -2.1
241,435 - -2.1
241,451 - -0.1
241,465 + +1.1
241,486 - +0.0
241,502 - +1.4
241,502 - -1.0
241,511 + +0.1
241,691 + MMP_RS01280 0.18 -0.1
241,742 - MMP_RS01280 0.22 -1.3
241,743 + MMP_RS01280 0.22 -1.3
241,743 + MMP_RS01280 0.22 -0.1
241,755 - MMP_RS01280 0.23 -0.9
241,822 + MMP_RS01280 0.29 -3.0
241,829 - MMP_RS01280 0.30 -0.2
241,829 - MMP_RS01280 0.30 -1.4
241,832 + MMP_RS01280 0.30 -3.1
241,862 + MMP_RS01280 0.33 +0.6
241,862 + MMP_RS01280 0.33 -0.5
241,866 + MMP_RS01280 0.33 +0.1
241,874 - MMP_RS01280 0.34 -1.4

Or see this region's nucleotide sequence