Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01190 and MMP_RS01195 are separated by 2 nucleotides MMP_RS01195 and MMP_RS01200 are separated by 120 nucleotides MMP_RS01200 and MMP_RS01205 are separated by 368 nucleotides
MMP_RS01190: MMP_RS01190 - cadmium-translocating P-type ATPase, at 222,645 to 224,720
_RS01190
MMP_RS01195: MMP_RS01195 - metalloregulator ArsR/SmtB family transcription factor, at 224,723 to 225,067
_RS01195
MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925
_RS01200
MMP_RS01205: MMP_RS01205 - manganese-dependent inorganic pyrophosphatase, at 226,294 to 227,217
_RS01205
Position (kb) 225
226 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 224.265 kb on - strand, within MMP_RS01190 at 224.349 kb on + strand, within MMP_RS01190 at 224.367 kb on - strand, within MMP_RS01190 at 224.370 kb on - strand, within MMP_RS01190 at 224.374 kb on - strand, within MMP_RS01190 at 224.485 kb on - strand, within MMP_RS01190 at 224.529 kb on - strand at 224.599 kb on + strand at 224.725 kb on + strand at 224.966 kb on + strand, within MMP_RS01195 at 225.125 kb on + strand at 225.187 kb on - strand at 225.187 kb on - strand at 225.188 kb on + strand at 225.412 kb on + strand, within MMP_RS01200 at 225.412 kb on + strand, within MMP_RS01200 at 225.572 kb on + strand, within MMP_RS01200 at 225.596 kb on + strand, within MMP_RS01200 at 225.693 kb on - strand, within MMP_RS01200 at 225.946 kb on - strand at 226.015 kb on + strand at 226.068 kb on - strand at 226.091 kb on - strand at 226.169 kb on - strand at 226.208 kb on - strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.219 kb on + strand at 226.219 kb on + strand at 226.224 kb on - strand at 226.225 kb on + strand at 226.228 kb on - strand at 226.229 kb on + strand at 226.291 kb on - strand at 226.301 kb on + strand at 226.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 224,265 - MMP_RS01190 0.78 +1.9 224,349 + MMP_RS01190 0.82 -0.2 224,367 - MMP_RS01190 0.83 +3.3 224,370 - MMP_RS01190 0.83 +4.9 224,374 - MMP_RS01190 0.83 -0.7 224,485 - MMP_RS01190 0.89 +1.9 224,529 - +1.1 224,599 + -1.1 224,725 + +2.4 224,966 + MMP_RS01195 0.70 -1.5 225,125 + -0.4 225,187 - -3.4 225,187 - +0.9 225,188 + -0.2 225,412 + MMP_RS01200 0.30 +1.6 225,412 + MMP_RS01200 0.30 -0.3 225,572 + MMP_RS01200 0.52 -0.4 225,596 + MMP_RS01200 0.55 -0.8 225,693 - MMP_RS01200 0.68 -0.8 225,946 - +0.4 226,015 + -0.9 226,068 - -1.5 226,091 - +1.1 226,169 - +0.8 226,208 - +0.3 226,215 + -0.6 226,215 + +0.4 226,215 + +1.4 226,218 - +0.1 226,218 - -1.0 226,218 - -4.2 226,219 + +0.2 226,219 + -0.5 226,224 - -0.2 226,225 + +0.5 226,228 - +1.9 226,229 + +0.5 226,291 - -0.5 226,301 + +0.3 226,301 + -2.5
Or see this region's nucleotide sequence