Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides MMP_RS00965 and MMP_RS00970 are separated by 81 nucleotides MMP_RS00970 and MMP_RS00975 overlap by 4 nucleotides
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand at 180.382 kb on - strand, within MMP_RS00965 at 180.382 kb on - strand, within MMP_RS00965 at 180.385 kb on - strand, within MMP_RS00965 at 180.407 kb on - strand at 180.407 kb on - strand at 180.408 kb on + strand at 180.420 kb on + strand at 180.447 kb on + strand at 180.632 kb on + strand at 180.924 kb on - strand at 180.933 kb on - strand at 181.086 kb on - strand at 181.086 kb on - strand at 181.149 kb on - strand at 181.151 kb on - strand at 181.152 kb on + strand at 181.291 kb on + strand at 181.406 kb on + strand at 181.434 kb on - strand at 181.464 kb on - strand at 181.482 kb on - strand at 181.501 kb on + strand at 181.621 kb on - strand at 181.636 kb on + strand at 181.666 kb on - strand at 181.731 kb on - strand at 181.883 kb on + strand, within MMP_RS00975 at 181.896 kb on - strand, within MMP_RS00975 at 182.019 kb on + strand, within MMP_RS00975 at 182.091 kb on - strand, within MMP_RS00975 at 182.092 kb on + strand, within MMP_RS00975 at 182.132 kb on + strand, within MMP_RS00975 at 182.198 kb on + strand, within MMP_RS00975 at 182.281 kb on - strand, within MMP_RS00975 at 182.293 kb on + strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.329 kb on + strand, within MMP_RS00975 at 182.332 kb on - strand, within MMP_RS00975 at 182.359 kb on - strand, within MMP_RS00975 at 182.399 kb on + strand, within MMP_RS00975 at 182.579 kb on + strand, within MMP_RS00975 at 182.621 kb on + strand, within MMP_RS00975 at 182.696 kb on + strand, within MMP_RS00975
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 179,573 - MMP_RS00960 0.26 +0.9 179,740 + MMP_RS00960 0.48 +0.4 179,889 + MMP_RS00960 0.68 +1.4 179,959 - MMP_RS00960 0.77 +0.9 180,064 - -2.3 180,382 - MMP_RS00965 0.88 +0.6 180,382 - MMP_RS00965 0.88 -0.4 180,385 - MMP_RS00965 0.89 +0.9 180,407 - -1.0 180,407 - +0.7 180,408 + +1.3 180,420 + +0.7 180,447 + +0.2 180,632 + -2.4 180,924 - -2.7 180,933 - +0.2 181,086 - -2.8 181,086 - -0.6 181,149 - +1.4 181,151 - +2.0 181,152 + -1.8 181,291 + -1.7 181,406 + +0.1 181,434 - -3.0 181,464 - -3.3 181,482 - -1.4 181,501 + +0.7 181,621 - +0.1 181,636 + -1.9 181,666 - -2.6 181,731 - +1.0 181,883 + MMP_RS00975 0.14 +0.8 181,896 - MMP_RS00975 0.15 +0.4 182,019 + MMP_RS00975 0.23 -1.2 182,091 - MMP_RS00975 0.29 +1.2 182,092 + MMP_RS00975 0.29 -0.8 182,132 + MMP_RS00975 0.32 +3.3 182,198 + MMP_RS00975 0.36 +1.3 182,281 - MMP_RS00975 0.42 +1.0 182,293 + MMP_RS00975 0.43 +0.8 182,328 - MMP_RS00975 0.46 +2.2 182,328 - MMP_RS00975 0.46 +1.3 182,329 + MMP_RS00975 0.46 +0.8 182,332 - MMP_RS00975 0.46 +1.1 182,359 - MMP_RS00975 0.48 +0.3 182,399 + MMP_RS00975 0.51 +3.3 182,579 + MMP_RS00975 0.64 +1.7 182,621 + MMP_RS00975 0.67 +2.6 182,696 + MMP_RS00975 0.73 +0.9
Or see this region's nucleotide sequence