Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00310 and MMP_RS00315 are separated by 130 nucleotides MMP_RS00315 and MMP_RS00320 overlap by 4 nucleotides MMP_RS00320 and MMP_RS00325 are separated by 13 nucleotides
MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025
_RS00310
MMP_RS00315: MMP_RS00315 - Nif3-like dinuclear metal center hexameric protein, at 68,156 to 68,896
_RS00315
MMP_RS00320: MMP_RS00320 - class I SAM-dependent methyltransferase, at 68,893 to 69,501
_RS00320
MMP_RS00325: MMP_RS00325 - RNA-binding protein, at 69,515 to 69,994
_RS00325
Position (kb)
68
69 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 67.162 kb on - strand at 67.163 kb on + strand at 67.174 kb on + strand at 67.269 kb on + strand, within MMP_RS00310 at 67.295 kb on - strand, within MMP_RS00310 at 67.297 kb on - strand, within MMP_RS00310 at 67.369 kb on - strand, within MMP_RS00310 at 67.370 kb on + strand, within MMP_RS00310 at 67.439 kb on + strand, within MMP_RS00310 at 67.476 kb on - strand, within MMP_RS00310 at 67.476 kb on - strand, within MMP_RS00310 at 67.476 kb on - strand, within MMP_RS00310 at 67.476 kb on - strand, within MMP_RS00310 at 67.476 kb on - strand, within MMP_RS00310 at 67.477 kb on + strand, within MMP_RS00310 at 67.478 kb on - strand, within MMP_RS00310 at 67.478 kb on - strand, within MMP_RS00310 at 67.478 kb on - strand, within MMP_RS00310 at 67.479 kb on + strand, within MMP_RS00310 at 67.479 kb on + strand, within MMP_RS00310 at 67.479 kb on + strand, within MMP_RS00310 at 67.496 kb on + strand, within MMP_RS00310 at 67.544 kb on + strand, within MMP_RS00310 at 67.568 kb on + strand, within MMP_RS00310 at 67.568 kb on + strand, within MMP_RS00310 at 67.569 kb on - strand, within MMP_RS00310 at 67.570 kb on + strand, within MMP_RS00310 at 67.570 kb on + strand, within MMP_RS00310 at 67.815 kb on + strand, within MMP_RS00310 at 67.834 kb on + strand, within MMP_RS00310 at 67.883 kb on + strand, within MMP_RS00310 at 67.996 kb on - strand at 68.011 kb on - strand at 68.011 kb on - strand at 68.017 kb on + strand at 68.017 kb on + strand at 68.026 kb on + strand at 68.049 kb on - strand at 68.060 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.075 kb on + strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.077 kb on + strand at 68.079 kb on + strand at 68.099 kb on - strand at 68.103 kb on + strand at 68.109 kb on + strand at 68.198 kb on - strand at 68.202 kb on - strand at 68.271 kb on + strand, within MMP_RS00315 at 68.339 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.613 kb on - strand, within MMP_RS00315 at 68.711 kb on - strand, within MMP_RS00315 at 68.711 kb on - strand, within MMP_RS00315 at 68.754 kb on + strand, within MMP_RS00315 at 69.287 kb on + strand, within MMP_RS00320 at 69.302 kb on + strand, within MMP_RS00320 at 69.446 kb on - strand at 69.447 kb on + strand at 69.448 kb on - strand at 69.454 kb on + strand at 69.749 kb on - strand, within MMP_RS00325 at 69.750 kb on + strand, within MMP_RS00325
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 67,162 - -0.5 67,163 + +0.9 67,174 + -0.5 67,269 + MMP_RS00310 0.17 -2.2 67,295 - MMP_RS00310 0.20 -0.2 67,297 - MMP_RS00310 0.20 -0.6 67,369 - MMP_RS00310 0.28 -4.1 67,370 + MMP_RS00310 0.28 -0.8 67,439 + MMP_RS00310 0.36 +0.0 67,476 - MMP_RS00310 0.40 -1.1 67,476 - MMP_RS00310 0.40 -0.8 67,476 - MMP_RS00310 0.40 -0.7 67,476 - MMP_RS00310 0.40 -1.3 67,476 - MMP_RS00310 0.40 +1.5 67,477 + MMP_RS00310 0.40 -0.0 67,478 - MMP_RS00310 0.40 -1.3 67,478 - MMP_RS00310 0.40 +0.3 67,478 - MMP_RS00310 0.40 -0.7 67,479 + MMP_RS00310 0.40 +0.1 67,479 + MMP_RS00310 0.40 -0.3 67,479 + MMP_RS00310 0.40 -1.1 67,496 + MMP_RS00310 0.42 -2.1 67,544 + MMP_RS00310 0.47 +0.0 67,568 + MMP_RS00310 0.50 -0.7 67,568 + MMP_RS00310 0.50 -0.6 67,569 - MMP_RS00310 0.50 -1.3 67,570 + MMP_RS00310 0.50 -1.0 67,570 + MMP_RS00310 0.50 -0.1 67,815 + MMP_RS00310 0.77 -1.8 67,834 + MMP_RS00310 0.79 -0.9 67,883 + MMP_RS00310 0.84 +1.9 67,996 - -1.3 68,011 - -2.1 68,011 - -0.0 68,017 + +0.1 68,017 + -1.1 68,026 + -1.0 68,049 - -0.5 68,060 - +0.5 68,074 - +0.4 68,074 - -0.2 68,074 - +1.1 68,074 - -0.2 68,075 + -1.7 68,076 - -2.3 68,076 - -3.0 68,076 - +1.3 68,076 - +0.4 68,077 + -1.2 68,079 + -2.4 68,099 - -1.6 68,103 + -0.7 68,109 + +0.2 68,198 - -1.4 68,202 - -1.3 68,271 + MMP_RS00315 0.16 -2.1 68,339 - MMP_RS00315 0.25 -2.0 68,343 - MMP_RS00315 0.25 -1.1 68,343 - MMP_RS00315 0.25 -0.8 68,343 - MMP_RS00315 0.25 -1.0 68,613 - MMP_RS00315 0.62 -3.3 68,711 - MMP_RS00315 0.75 -2.7 68,711 - MMP_RS00315 0.75 -1.8 68,754 + MMP_RS00315 0.81 -2.0 69,287 + MMP_RS00320 0.65 -2.3 69,302 + MMP_RS00320 0.67 -1.3 69,446 - -1.6 69,447 + -1.5 69,448 - +0.1 69,454 + -0.3 69,749 - MMP_RS00325 0.49 +1.8 69,750 + MMP_RS00325 0.49 -0.9
Or see this region's nucleotide sequence