Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00075 and MMP_RS00080 are separated by 26 nucleotides MMP_RS00080 and MMP_RS00085 are separated by 42 nucleotides
MMP_RS00075: MMP_RS00075 - hypothetical protein, at 19,370 to 20,479
_RS00075
MMP_RS00080: MMP_RS00080 - RecB-family nuclease, at 20,506 to 20,931
_RS00080
MMP_RS00085: MMP_RS00085 - DNA cytosine methyltransferase, at 20,974 to 22,041
_RS00085
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.527 kb on + strand at 19.562 kb on - strand at 19.563 kb on + strand at 19.563 kb on + strand at 19.859 kb on + strand at 20.020 kb on + strand at 20.084 kb on - strand at 20.135 kb on - strand at 20.705 kb on + strand, within MMP_RS00080 at 20.707 kb on - strand, within MMP_RS00080 at 20.731 kb on - strand, within MMP_RS00080 at 20.839 kb on + strand, within MMP_RS00080 at 20.842 kb on - strand, within MMP_RS00080 at 20.961 kb on + strand at 20.975 kb on - strand at 20.976 kb on + strand at 20.979 kb on - strand at 20.979 kb on - strand at 20.980 kb on + strand at 21.054 kb on + strand at 21.128 kb on + strand, within MMP_RS00085 at 21.209 kb on - strand, within MMP_RS00085 at 21.271 kb on + strand, within MMP_RS00085 at 21.518 kb on - strand, within MMP_RS00085 at 21.523 kb on - strand, within MMP_RS00085 at 21.567 kb on - strand, within MMP_RS00085 at 21.588 kb on + strand, within MMP_RS00085 at 21.692 kb on + strand, within MMP_RS00085 at 21.713 kb on - strand, within MMP_RS00085 at 21.721 kb on + strand, within MMP_RS00085 at 21.743 kb on - strand, within MMP_RS00085 at 21.763 kb on - strand, within MMP_RS00085 at 21.779 kb on + strand, within MMP_RS00085 at 21.826 kb on - strand, within MMP_RS00085 at 21.826 kb on - strand, within MMP_RS00085 at 21.827 kb on + strand, within MMP_RS00085 at 21.827 kb on + strand, within MMP_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 19,527 + -0.9 19,562 - -0.5 19,563 + -1.1 19,563 + -1.1 19,859 + -1.2 20,020 + -1.5 20,084 - +0.1 20,135 - -1.9 20,705 + MMP_RS00080 0.47 +1.2 20,707 - MMP_RS00080 0.47 +1.7 20,731 - MMP_RS00080 0.53 +1.8 20,839 + MMP_RS00080 0.78 +0.9 20,842 - MMP_RS00080 0.79 -0.0 20,961 + -2.1 20,975 - -1.4 20,976 + +0.7 20,979 - -0.8 20,979 - +0.8 20,980 + -2.1 21,054 + +2.3 21,128 + MMP_RS00085 0.14 -0.5 21,209 - MMP_RS00085 0.22 +2.0 21,271 + MMP_RS00085 0.28 -1.3 21,518 - MMP_RS00085 0.51 -0.3 21,523 - MMP_RS00085 0.51 +1.1 21,567 - MMP_RS00085 0.56 +0.4 21,588 + MMP_RS00085 0.57 +1.5 21,692 + MMP_RS00085 0.67 +0.7 21,713 - MMP_RS00085 0.69 +1.7 21,721 + MMP_RS00085 0.70 -0.6 21,743 - MMP_RS00085 0.72 +0.8 21,763 - MMP_RS00085 0.74 -1.4 21,779 + MMP_RS00085 0.75 +0.8 21,826 - MMP_RS00085 0.80 +0.8 21,826 - MMP_RS00085 0.80 +1.0 21,827 + MMP_RS00085 0.80 -0.4 21,827 + MMP_RS00085 0.80 +1.1
Or see this region's nucleotide sequence