Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13940

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
3,110,485	+		LRK54_RS13935	0.39	-0.0
3,110,485	+		LRK54_RS13935	0.39	+1.6
3,110,485	+		LRK54_RS13935	0.39	-0.0
3,110,485	+		LRK54_RS13935	0.39	+0.7
3,110,485	+		LRK54_RS13935	0.39	-0.1
3,110,485	+		LRK54_RS13935	0.39	-0.3
3,110,485	+		LRK54_RS13935	0.39	-1.9
3,110,485	+		LRK54_RS13935	0.39	+0.8
3,110,485	+		LRK54_RS13935	0.39	-1.8
3,110,485	+		LRK54_RS13935	0.39	-0.4
3,110,485	+		LRK54_RS13935	0.39	+1.5
3,110,485	+		LRK54_RS13935	0.39	+0.0
3,110,485	+		LRK54_RS13935	0.39	+3.1
3,110,485	+		LRK54_RS13935	0.39	-0.0
3,110,485	+		LRK54_RS13935	0.39	+2.8
3,110,485	+		LRK54_RS13935	0.39	+0.2
3,110,485	+		LRK54_RS13935	0.39	-0.7
3,110,485	+		LRK54_RS13935	0.39	-0.2
3,110,485	+		LRK54_RS13935	0.39	-0.4
3,110,485	+		LRK54_RS13935	0.39	-0.3
3,110,485	+		LRK54_RS13935	0.39	-0.2
3,110,485	+		LRK54_RS13935	0.39	+1.8
3,110,485	+		LRK54_RS13935	0.39	-1.1
3,110,485	+		LRK54_RS13935	0.39	+0.1
3,110,485	+		LRK54_RS13935	0.39	-1.5
3,110,485	+		LRK54_RS13935	0.39	-0.7
3,110,485	+		LRK54_RS13935	0.39	-0.4
3,110,485	+		LRK54_RS13935	0.39	-0.6
3,110,486	-		LRK54_RS13935	0.39	+0.5
3,110,486	-		LRK54_RS13935	0.39	-2.0
3,110,486	-		LRK54_RS13935	0.39	+2.4
3,110,486	-		LRK54_RS13935	0.39	+0.6
3,110,486	-		LRK54_RS13935	0.39	-0.5
3,110,486	-		LRK54_RS13935	0.39	-1.2
3,110,486	-		LRK54_RS13935	0.39	-1.0
3,110,486	-		LRK54_RS13935	0.39	-0.4
3,110,486	-		LRK54_RS13935	0.39	+0.6
3,110,486	-		LRK54_RS13935	0.39	-0.4
3,110,486	-		LRK54_RS13935	0.39	-1.5
3,110,486	-		LRK54_RS13935	0.39	-1.5
3,110,486	-		LRK54_RS13935	0.39	-1.0
3,110,486	-		LRK54_RS13935	0.39	-1.4
3,110,486	-		LRK54_RS13935	0.39	-0.3
3,110,486	-		LRK54_RS13935	0.39	-0.3
3,110,486	-		LRK54_RS13935	0.39	-0.4
3,110,486	-		LRK54_RS13935	0.39	-1.2
3,110,486	-		LRK54_RS13935	0.39	-1.4
3,110,486	-		LRK54_RS13935	0.39	-1.4
3,110,486	-		LRK54_RS13935	0.39	+0.1
3,110,508	+		LRK54_RS13935	0.40	+1.4
3,110,508	+		LRK54_RS13935	0.40	+0.6
3,110,508	+		LRK54_RS13935	0.40	-0.4
3,110,508	+		LRK54_RS13935	0.40	-0.3
3,110,508	+		LRK54_RS13935	0.40	+0.0
3,110,508	+		LRK54_RS13935	0.40	+0.1
3,110,508	+		LRK54_RS13935	0.40	-0.4
3,110,508	+		LRK54_RS13935	0.40	-1.8
3,110,508	+		LRK54_RS13935	0.40	-0.9
3,110,508	+		LRK54_RS13935	0.40	+0.3
3,110,509	-		LRK54_RS13935	0.41	+1.0
3,110,509	-		LRK54_RS13935	0.41	+1.5
3,110,509	-		LRK54_RS13935	0.41	+0.6
3,110,509	-		LRK54_RS13935	0.41	-0.4
3,110,509	-		LRK54_RS13935	0.41	+1.2
3,110,509	-		LRK54_RS13935	0.41	-0.5
3,110,509	-		LRK54_RS13935	0.41	+2.2
3,110,509	-		LRK54_RS13935	0.41	+1.8
3,110,509	-		LRK54_RS13935	0.41	+1.2
3,110,509	-		LRK54_RS13935	0.41	+0.2
3,110,509	-		LRK54_RS13935	0.41	-0.2
3,110,509	-		LRK54_RS13935	0.41	+1.2
3,110,575	-		LRK54_RS13935	0.46	-0.9
3,110,613	+		LRK54_RS13935	0.49	-1.0
3,110,613	+		LRK54_RS13935	0.49	-1.0
3,110,613	+		LRK54_RS13935	0.49	-0.3
3,110,614	-		LRK54_RS13935	0.49	-0.2
3,110,614	-		LRK54_RS13935	0.49	-0.2
3,110,614	-		LRK54_RS13935	0.49	+0.2
3,110,614	-		LRK54_RS13935	0.49	-0.9
3,110,614	-		LRK54_RS13935	0.49	+0.4
3,110,694	+		LRK54_RS13935	0.56	-1.8
3,110,694	+		LRK54_RS13935	0.56	+0.1
3,110,694	+		LRK54_RS13935	0.56	-1.4
3,110,694	+		LRK54_RS13935	0.56	+0.6
3,110,694	+		LRK54_RS13935	0.56	+0.5
3,110,694	+		LRK54_RS13935	0.56	+0.3
3,110,694	+		LRK54_RS13935	0.56	+1.5
3,110,694	+		LRK54_RS13935	0.56	-2.3
3,110,694	+		LRK54_RS13935	0.56	-0.2
3,110,694	+		LRK54_RS13935	0.56	-0.7
3,110,694	+		LRK54_RS13935	0.56	+0.6
3,110,694	+		LRK54_RS13935	0.56	-0.5
3,110,694	+		LRK54_RS13935	0.56	+0.6
3,110,694	+		LRK54_RS13935	0.56	-1.1
3,110,694	+		LRK54_RS13935	0.56	-0.1
3,110,695	-		LRK54_RS13935	0.56	-0.2
3,110,695	-		LRK54_RS13935	0.56	+0.2
3,110,695	-		LRK54_RS13935	0.56	+0.3
3,110,695	-		LRK54_RS13935	0.56	+0.9
3,110,695	-		LRK54_RS13935	0.56	+0.0
3,110,695	-		LRK54_RS13935	0.56	-2.0
3,110,820	+		LRK54_RS13935	0.66	-1.8
3,110,820	+		LRK54_RS13935	0.66	-0.1
3,110,919	+		LRK54_RS13935	0.74	+0.2
3,110,919	+		LRK54_RS13935	0.74	+0.2
3,110,919	+		LRK54_RS13935	0.74	-2.0
3,110,919	+		LRK54_RS13935	0.74	+0.2
3,110,919	+		LRK54_RS13935	0.74	-2.6
3,110,919	+		LRK54_RS13935	0.74	+0.8
3,110,920	-		LRK54_RS13935	0.75	+0.0
3,110,920	-		LRK54_RS13935	0.75	-0.4
3,110,920	-		LRK54_RS13935	0.75	+0.8
3,110,920	-		LRK54_RS13935	0.75	-0.2
3,110,947	-		LRK54_RS13935	0.77	+0.3
3,111,083	+		LRK54_RS13935	0.88	+1.2
3,111,083	+		LRK54_RS13935	0.88	-0.8
3,111,083	+		LRK54_RS13935	0.88	-2.6
3,111,083	+		LRK54_RS13935	0.88	+0.8
3,111,083	+		LRK54_RS13935	0.88	-0.4
3,111,083	+		LRK54_RS13935	0.88	-0.8
3,111,083	+		LRK54_RS13935	0.88	+0.4
3,111,083	+		LRK54_RS13935	0.88	+0.2
3,111,083	+		LRK54_RS13935	0.88	-0.4
3,111,084	-		LRK54_RS13935	0.88	+1.1
3,111,084	-		LRK54_RS13935	0.88	+0.7
3,111,084	-		LRK54_RS13935	0.88	-1.3
3,111,084	-		LRK54_RS13935	0.88	+0.8
3,111,084	-		LRK54_RS13935	0.88	+1.3
3,111,084	-		LRK54_RS13935	0.88	+1.7
3,111,084	-		LRK54_RS13935	0.88	-0.9
3,111,084	-		LRK54_RS13935	0.88	+0.1
3,111,084	-		LRK54_RS13935	0.88	-2.1
3,111,084	-		LRK54_RS13935	0.88	-0.2
3,111,084	-		LRK54_RS13935	0.88	-1.2
3,111,287	+				-0.1
3,111,287	+				-1.4
3,111,287	+				-0.6
3,111,287	+				-0.6
3,111,287	+				-1.7
3,111,287	+				-1.1
3,111,287	+				-0.3
3,111,287	+				+1.5
3,111,288	-				-0.2
3,111,288	-				+1.1
3,111,288	-				-0.1
3,111,288	-				+1.8
3,111,288	-				-2.2
3,111,288	-				-1.5
3,111,288	-				-1.0
3,111,288	-				-0.1
3,111,288	-				-0.2
3,111,288	-				-0.8
3,111,288	-				-0.1
3,111,382	+		LRK54_RS13940	0.20	+1.2
3,111,382	+		LRK54_RS13940	0.20	-0.5
3,111,383	-		LRK54_RS13940	0.20	+0.3
3,111,383	-		LRK54_RS13940	0.20	-0.5
3,111,383	-		LRK54_RS13940	0.20	+0.1
3,111,383	-		LRK54_RS13940	0.20	-0.3
3,111,395	-		LRK54_RS13940	0.22	+0.2
3,111,454	+		LRK54_RS13940	0.30	+0.4
3,111,454	+		LRK54_RS13940	0.30	+0.8
3,111,454	+		LRK54_RS13940	0.30	+0.2
3,111,454	+		LRK54_RS13940	0.30	+0.2
3,111,454	+		LRK54_RS13940	0.30	-0.1
3,111,454	+		LRK54_RS13940	0.30	-2.7
3,111,454	+		LRK54_RS13940	0.30	+0.2
3,111,454	+		LRK54_RS13940	0.30	-1.7
3,111,454	+		LRK54_RS13940	0.30	-0.2
3,111,455	-		LRK54_RS13940	0.30	-0.8
3,111,455	-		LRK54_RS13940	0.30	-1.7
3,111,455	-		LRK54_RS13940	0.30	+0.4
3,111,455	-		LRK54_RS13940	0.30	+1.2
3,111,455	-		LRK54_RS13940	0.30	-1.2
3,111,455	-		LRK54_RS13940	0.30	+0.2
3,111,455	-		LRK54_RS13940	0.30	-1.2
3,111,455	-		LRK54_RS13940	0.30	+2.0
3,111,455	-		LRK54_RS13940	0.30	+0.1
3,111,455	-		LRK54_RS13940	0.30	+0.1
3,111,455	-		LRK54_RS13940	0.30	-0.1
3,111,455	-		LRK54_RS13940	0.30	-0.5
3,111,455	-		LRK54_RS13940	0.30	+0.3
3,111,794	-		LRK54_RS13940	0.78	+1.4
3,111,794	-		LRK54_RS13940	0.78	-0.0
3,111,794	-		LRK54_RS13940	0.78	+0.7
3,112,015	-				-0.8
3,112,269	+		LRK54_RS13945	0.26	+0.4
3,112,338	+		LRK54_RS13945	0.31	+0.7
3,112,338	+		LRK54_RS13945	0.31	-2.0
3,112,338	+		LRK54_RS13945	0.31	-1.0
3,112,338	+		LRK54_RS13945	0.31	-1.5
3,112,338	+		LRK54_RS13945	0.31	+2.5
3,112,339	-		LRK54_RS13945	0.31	+0.4
3,112,339	-		LRK54_RS13945	0.31	+1.0
3,112,339	-		LRK54_RS13945	0.31	-0.8
3,112,339	-		LRK54_RS13945	0.31	+1.8
3,112,339	-		LRK54_RS13945	0.31	+0.8
3,112,339	-		LRK54_RS13945	0.31	+1.4
3,112,339	-		LRK54_RS13945	0.31	-0.2
3,112,339	-		LRK54_RS13945	0.31	+0.2
3,112,339	-		LRK54_RS13945	0.31	-1.1
3,112,339	-		LRK54_RS13945	0.31	-0.5
3,112,383	+		LRK54_RS13945	0.35	-2.4
3,112,384	-		LRK54_RS13945	0.35	-1.3
3,112,384	-		LRK54_RS13945	0.35	+1.2
3,112,384	-		LRK54_RS13945	0.35	+1.4
3,112,384	-		LRK54_RS13945	0.35	-0.2
3,112,644	+		LRK54_RS13945	0.57	-0.2
3,112,644	+		LRK54_RS13945	0.57	-0.9
3,112,644	+		LRK54_RS13945	0.57	+1.5
3,112,644	+		LRK54_RS13945	0.57	+0.5
3,112,644	+		LRK54_RS13945	0.57	+0.3
3,112,644	+		LRK54_RS13945	0.57	-0.1
3,112,644	+		LRK54_RS13945	0.57	+0.8
3,112,644	+		LRK54_RS13945	0.57	-0.8
3,112,645	-		LRK54_RS13945	0.57	-0.5
3,112,645	-		LRK54_RS13945	0.57	+1.4
3,112,645	-		LRK54_RS13945	0.57	+0.3
3,112,645	-		LRK54_RS13945	0.57	+0.3
3,112,645	-		LRK54_RS13945	0.57	-0.1
3,112,645	-		LRK54_RS13945	0.57	-0.4
3,112,645	-		LRK54_RS13945	0.57	-1.3
3,112,645	-		LRK54_RS13945	0.57	-0.3
3,112,645	-		LRK54_RS13945	0.57	+0.8
3,112,645	-		LRK54_RS13945	0.57	+0.2
3,112,645	-		LRK54_RS13945	0.57	+0.1
3,112,645	-		LRK54_RS13945	0.57	-0.9
3,112,755	+		LRK54_RS13945	0.67	-0.8
3,112,755	+		LRK54_RS13945	0.67	+0.2
3,112,755	+		LRK54_RS13945	0.67	-0.4
3,112,755	+		LRK54_RS13945	0.67	-1.0
3,112,755	+		LRK54_RS13945	0.67	-1.4
3,112,755	+		LRK54_RS13945	0.67	-1.2
3,112,755	+		LRK54_RS13945	0.67	+0.2
3,112,755	+		LRK54_RS13945	0.67	+0.1
3,112,755	+		LRK54_RS13945	0.67	-0.2
3,112,755	+		LRK54_RS13945	0.67	+0.2
3,112,755	+		LRK54_RS13945	0.67	-0.3
3,112,755	+		LRK54_RS13945	0.67	-0.8
3,112,755	+		LRK54_RS13945	0.67	+0.5
3,112,755	+		LRK54_RS13945	0.67	+0.8
3,112,755	+		LRK54_RS13945	0.67	-1.5
3,112,755	+		LRK54_RS13945	0.67	-0.4
3,112,755	+		LRK54_RS13945	0.67	+1.8
3,112,755	+		LRK54_RS13945	0.67	-1.4
3,112,756	-		LRK54_RS13945	0.67	-2.0
3,112,756	-		LRK54_RS13945	0.67	-0.0
3,112,756	-		LRK54_RS13945	0.67	+0.2
3,112,756	-		LRK54_RS13945	0.67	-2.0
3,112,756	-		LRK54_RS13945	0.67	-0.5
3,112,756	-		LRK54_RS13945	0.67	-0.5
3,112,756	-		LRK54_RS13945	0.67	-0.2
3,112,756	-		LRK54_RS13945	0.67	+0.6
3,112,756	-		LRK54_RS13945	0.67	+1.8
3,112,756	-		LRK54_RS13945	0.67	+0.3
3,112,756	-		LRK54_RS13945	0.67	+0.4
3,112,756	-		LRK54_RS13945	0.67	-1.7