Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10515

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,320,484	+		LRK54_RS10510	0.10	-0.8
2,320,484	+		LRK54_RS10510	0.10	-0.4
2,320,485	-		LRK54_RS10510	0.10	+0.1
2,320,485	-		LRK54_RS10510	0.10	-0.6
2,320,485	-		LRK54_RS10510	0.10	-0.7
2,320,485	-		LRK54_RS10510	0.10	-0.4
2,320,595	+		LRK54_RS10510	0.24	-0.4
2,320,596	-		LRK54_RS10510	0.24	-0.6
2,320,635	-		LRK54_RS10510	0.29	+0.6
2,320,858	+		LRK54_RS10510	0.56	-0.0
2,320,858	+		LRK54_RS10510	0.56	-1.5
2,320,858	+		LRK54_RS10510	0.56	-1.8
2,320,858	+		LRK54_RS10510	0.56	-0.5
2,320,859	-		LRK54_RS10510	0.56	-2.4
2,320,859	-		LRK54_RS10510	0.56	-0.0
2,320,859	-		LRK54_RS10510	0.56	-1.0
2,320,859	-		LRK54_RS10510	0.56	-0.8
2,320,859	-		LRK54_RS10510	0.56	-1.2
2,320,958	+		LRK54_RS10510	0.68	-0.2
2,320,958	+		LRK54_RS10510	0.68	+0.2
2,320,958	+		LRK54_RS10510	0.68	-0.6
2,320,958	+		LRK54_RS10510	0.68	-0.8
2,320,958	+		LRK54_RS10510	0.68	-1.9
2,320,958	+		LRK54_RS10510	0.68	-2.8
2,320,958	+		LRK54_RS10510	0.68	-0.1
2,320,958	+		LRK54_RS10510	0.68	-0.5
2,320,959	-		LRK54_RS10510	0.68	+1.0
2,320,959	-		LRK54_RS10510	0.68	-1.7
2,320,959	-		LRK54_RS10510	0.68	+1.5
2,320,959	-		LRK54_RS10510	0.68	-2.1
2,320,959	-		LRK54_RS10510	0.68	+1.4
2,320,959	-		LRK54_RS10510	0.68	-1.8
2,320,959	-		LRK54_RS10510	0.68	-1.4
2,321,066	+		LRK54_RS10510	0.81	+0.5
2,321,066	+		LRK54_RS10510	0.81	+1.4
2,321,067	-		LRK54_RS10510	0.81	+0.8
2,321,067	-		LRK54_RS10510	0.81	-1.4
2,321,168	+				-2.1
2,321,180	+				+0.7
2,321,181	-				-1.1
2,321,181	-				-1.2
2,321,181	-				+2.0
2,321,356	+				-2.6
2,321,357	-				-1.0
2,321,374	+				+1.7
2,321,374	+				-0.4
2,321,374	+				+0.1
2,321,374	+				-3.6
2,321,375	-				-0.6
2,321,407	+				-0.1
2,321,407	+				+0.5
2,321,407	+				-0.2
2,321,407	+				-1.0
2,321,407	+				-2.7
2,321,407	+				-2.1
2,321,407	+				-2.9
2,321,408	-				-1.6
2,321,408	-				-2.6
2,321,408	-				-2.4
2,321,408	-				-2.3
2,321,686	+		LRK54_RS10515	0.32	-1.2
2,321,756	-		LRK54_RS10515	0.39	+2.0
2,321,915	-		LRK54_RS10515	0.55	-1.2
2,321,915	-		LRK54_RS10515	0.55	-1.8
2,321,915	-		LRK54_RS10515	0.55	-1.7
2,321,915	-		LRK54_RS10515	0.55	-0.2
2,321,998	+		LRK54_RS10515	0.63	-0.7
2,321,998	+		LRK54_RS10515	0.63	-0.0
2,321,998	+		LRK54_RS10515	0.63	-0.8
2,321,998	+		LRK54_RS10515	0.63	-0.7
2,321,998	+		LRK54_RS10515	0.63	-0.6
2,321,998	+		LRK54_RS10515	0.63	-1.1
2,321,998	+		LRK54_RS10515	0.63	-1.0
2,321,999	-		LRK54_RS10515	0.63	+0.5
2,321,999	-		LRK54_RS10515	0.63	-0.5
2,321,999	-		LRK54_RS10515	0.63	+0.3
2,321,999	-		LRK54_RS10515	0.63	-0.4
2,321,999	-		LRK54_RS10515	0.63	-0.9
2,321,999	-		LRK54_RS10515	0.63	-0.1
2,321,999	-		LRK54_RS10515	0.63	-2.3
2,322,001	+		LRK54_RS10515	0.63	-0.9
2,322,001	+		LRK54_RS10515	0.63	-0.0
2,322,001	+		LRK54_RS10515	0.63	-0.9
2,322,001	+		LRK54_RS10515	0.63	-2.0
2,322,001	+		LRK54_RS10515	0.63	-2.1
2,322,001	+		LRK54_RS10515	0.63	-0.0
2,322,001	+		LRK54_RS10515	0.63	-1.2
2,322,002	-		LRK54_RS10515	0.63	-0.9
2,322,002	-		LRK54_RS10515	0.63	-0.7
2,322,002	-		LRK54_RS10515	0.63	-1.3
2,322,002	-		LRK54_RS10515	0.63	-2.6
2,322,002	-		LRK54_RS10515	0.63	-0.1
2,322,002	-		LRK54_RS10515	0.63	-0.3
2,322,002	-		LRK54_RS10515	0.63	-2.7
2,322,002	-		LRK54_RS10515	0.63	-1.6
2,322,002	-		LRK54_RS10515	0.63	+0.1
2,322,002	-		LRK54_RS10515	0.63	-0.5
2,322,002	-		LRK54_RS10515	0.63	-1.5
2,322,014	+		LRK54_RS10515	0.65	-0.2
2,322,061	+		LRK54_RS10515	0.69	-0.6
2,322,061	+		LRK54_RS10515	0.69	+0.3
2,322,061	+		LRK54_RS10515	0.69	+0.1
2,322,061	+		LRK54_RS10515	0.69	-1.1
2,322,061	+		LRK54_RS10515	0.69	-0.2
2,322,061	+		LRK54_RS10515	0.69	-0.0
2,322,061	+		LRK54_RS10515	0.69	-0.6
2,322,061	+		LRK54_RS10515	0.69	-0.2
2,322,061	+		LRK54_RS10515	0.69	-1.6
2,322,061	+		LRK54_RS10515	0.69	+0.4
2,322,061	+		LRK54_RS10515	0.69	+0.2
2,322,061	+		LRK54_RS10515	0.69	-0.6
2,322,061	+		LRK54_RS10515	0.69	-2.8
2,322,061	+		LRK54_RS10515	0.69	+0.6
2,322,062	-		LRK54_RS10515	0.69	-1.9
2,322,062	-		LRK54_RS10515	0.69	-0.9
2,322,062	-		LRK54_RS10515	0.69	-0.8
2,322,062	-		LRK54_RS10515	0.69	-1.9
2,322,062	-		LRK54_RS10515	0.69	+1.7
2,322,062	-		LRK54_RS10515	0.69	-1.2
2,322,062	-		LRK54_RS10515	0.69	-1.0
2,322,062	-		LRK54_RS10515	0.69	-1.0
2,322,062	-		LRK54_RS10515	0.69	+0.7
2,322,062	-		LRK54_RS10515	0.69	-2.0
2,322,062	-		LRK54_RS10515	0.69	-0.0
2,322,062	-		LRK54_RS10515	0.69	+0.6
2,322,062	-		LRK54_RS10515	0.69	-0.6
2,322,062	-		LRK54_RS10515	0.69	-1.1
2,322,062	-		LRK54_RS10515	0.69	-2.2
2,322,062	-		LRK54_RS10515	0.69	+0.8
2,322,199	+		LRK54_RS10515	0.83	-2.9
2,322,199	+		LRK54_RS10515	0.83	-0.5
2,322,199	+		LRK54_RS10515	0.83	+0.6
2,322,199	+		LRK54_RS10515	0.83	-0.9
2,322,199	+		LRK54_RS10515	0.83	-1.7
2,322,199	+		LRK54_RS10515	0.83	-0.6
2,322,199	+		LRK54_RS10515	0.83	-1.0
2,322,199	+		LRK54_RS10515	0.83	-1.2
2,322,199	+		LRK54_RS10515	0.83	-1.2
2,322,199	+		LRK54_RS10515	0.83	-0.9
2,322,199	+		LRK54_RS10515	0.83	-0.4
2,322,199	+		LRK54_RS10515	0.83	-0.5
2,322,199	+		LRK54_RS10515	0.83	-1.5
2,322,199	+		LRK54_RS10515	0.83	+0.4
2,322,199	+		LRK54_RS10515	0.83	-2.1
2,322,200	-		LRK54_RS10515	0.83	+0.4
2,322,200	-		LRK54_RS10515	0.83	-0.8
2,322,200	-		LRK54_RS10515	0.83	-2.1
2,322,200	-		LRK54_RS10515	0.83	+1.1
2,322,200	-		LRK54_RS10515	0.83	+0.0
2,322,200	-		LRK54_RS10515	0.83	-1.4
2,322,200	-		LRK54_RS10515	0.83	+0.1
2,322,200	-		LRK54_RS10515	0.83	-0.8
2,322,200	-		LRK54_RS10515	0.83	-1.6
2,322,200	-		LRK54_RS10515	0.83	-1.0
2,322,200	-		LRK54_RS10515	0.83	-0.7
2,322,200	-		LRK54_RS10515	0.83	+0.1
2,322,200	-		LRK54_RS10515	0.83	-1.9
2,322,200	-		LRK54_RS10515	0.83	-1.0
2,322,200	-		LRK54_RS10515	0.83	+1.0
2,322,286	+				+2.0
2,322,286	+				-0.7
2,322,287	-				+0.3
2,322,287	-				-0.9
2,322,380	+				-0.6
2,322,380	+				+0.7
2,322,381	-				-1.1
2,322,381	-				-1.4
2,322,381	-				-1.4
2,322,381	-				-0.9
2,322,381	-				-1.4
2,322,381	-				-0.7
2,322,422	-				+0.8
2,322,432	+				+1.8
2,322,432	+				+1.0
2,322,497	+				-0.5
2,322,497	+				-1.6
2,322,497	+				-0.7
2,322,497	+				-0.2
2,322,498	-				-1.3
2,322,498	-				-1.1
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,662	+		LRK54_RS10520	0.21	-0.9
2,322,662	+		LRK54_RS10520	0.21	+0.0
2,322,662	+		LRK54_RS10520	0.21	-2.2
2,322,662	+		LRK54_RS10520	0.21	-1.7
2,322,662	+		LRK54_RS10520	0.21	+4.3
2,322,662	+		LRK54_RS10520	0.21	-0.0
2,322,662	+		LRK54_RS10520	0.21	-1.0
2,322,662	+		LRK54_RS10520	0.21	-0.3
2,322,662	+		LRK54_RS10520	0.21	-0.0
2,322,662	+		LRK54_RS10520	0.21	-0.1
2,322,662	+		LRK54_RS10520	0.21	-0.6
2,322,662	+		LRK54_RS10520	0.21	-0.4
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,662	+		LRK54_RS10520	0.21	+0.4
2,322,662	+		LRK54_RS10520	0.21	-0.4
2,322,662	+		LRK54_RS10520	0.21	-0.4
2,322,662	+		LRK54_RS10520	0.21	-0.1
2,322,662	+		LRK54_RS10520	0.21	-2.1
2,322,662	+		LRK54_RS10520	0.21	+1.0
2,322,663	-		LRK54_RS10520	0.22	-1.7
2,322,663	-		LRK54_RS10520	0.22	-0.9
2,322,663	-		LRK54_RS10520	0.22	-1.5
2,322,663	-		LRK54_RS10520	0.22	-0.2
2,322,663	-		LRK54_RS10520	0.22	-0.6
2,322,663	-		LRK54_RS10520	0.22	-0.3
2,322,663	-		LRK54_RS10520	0.22	-1.7
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	+0.1
2,322,663	-		LRK54_RS10520	0.22	-0.5
2,322,663	-		LRK54_RS10520	0.22	-0.9
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+2.0
2,322,663	-				-1.7
2,322,663	-		LRK54_RS10520	0.22	-1.4
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+0.5
2,322,663	-		LRK54_RS10520	0.22	-1.1
2,322,663	-		LRK54_RS10520	0.22	-3.6
2,322,663	-		LRK54_RS10520	0.22	-0.9
2,322,663	-		LRK54_RS10520	0.22	+0.3
2,322,663	-		LRK54_RS10520	0.22	-1.8
2,322,663	-		LRK54_RS10520	0.22	-0.1
2,322,663	-		LRK54_RS10520	0.22	+0.7
2,322,663	-		LRK54_RS10520	0.22	-3.0
2,322,663	-		LRK54_RS10520	0.22	+0.8
2,322,663	-		LRK54_RS10520	0.22	+0.1
2,322,663	-		LRK54_RS10520	0.22	-0.4
2,322,663	-		LRK54_RS10520	0.22	-1.3
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	-1.2
2,322,663	-		LRK54_RS10520	0.22	-2.3
2,322,665	+		LRK54_RS10520	0.22	+0.1
2,322,665	+		LRK54_RS10520	0.22	-0.2
2,322,665	+		LRK54_RS10520	0.22	+1.0
2,322,666	-		LRK54_RS10520	0.22	+0.6
2,322,666	-		LRK54_RS10520	0.22	-1.2
2,322,873	+		LRK54_RS10520	0.45	-0.5
2,322,874	-		LRK54_RS10520	0.45	-0.9
2,322,980	+		LRK54_RS10520	0.57	+0.4
2,322,980	+		LRK54_RS10520	0.57	-1.0
2,322,980	+		LRK54_RS10520	0.57	-1.3
2,322,980	+		LRK54_RS10520	0.57	-1.3
2,322,981	-		LRK54_RS10520	0.57	-1.4
2,322,981	-		LRK54_RS10520	0.57	-0.1
2,323,154	+		LRK54_RS10520	0.77	-1.4
2,323,154	+		LRK54_RS10520	0.77	-0.9
2,323,154	+		LRK54_RS10520	0.77	+0.1
2,323,155	-		LRK54_RS10520	0.77	-0.7
2,323,155	-		LRK54_RS10520	0.77	+0.0
2,323,155	-		LRK54_RS10520	0.77	-0.4
2,323,155	-		LRK54_RS10520	0.77	-0.6
2,323,155	-		LRK54_RS10520	0.77	-0.0
2,323,155	-		LRK54_RS10520	0.77	-0.6
2,323,155	-		LRK54_RS10520	0.77	-1.2
2,323,155	-		LRK54_RS10520	0.77	-1.5
2,323,155	-		LRK54_RS10520	0.77	-0.6
2,323,155	-		LRK54_RS10520	0.77	+0.2
2,323,361	+				+1.1
2,323,361	+				-0.6
2,323,361	+				-1.2
2,323,361	+				-0.7
2,323,362	-				-0.4