Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05280

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
1,130,488	+				+0.6
1,130,489	-				-0.1
1,130,489	-				-0.3
1,130,489	-				+0.3
1,130,489	-				-0.4
1,130,565	-		LRK54_RS05275	0.30	+0.8
1,130,656	+		LRK54_RS05275	0.62	+1.3
1,130,657	-		LRK54_RS05275	0.62	+1.2
1,130,657	-		LRK54_RS05275	0.62	+0.1
1,130,758	-				-2.0
1,130,790	-				-0.6
1,130,944	+				-0.7
1,130,945	-				+1.0
1,130,945	-				-0.5
1,131,106	+				+1.1
1,131,107	-				-2.4
1,131,107	-				+0.1
1,131,187	+		LRK54_RS05280	0.12	-0.5
1,131,187	+		LRK54_RS05280	0.12	+1.4
1,131,188	-		LRK54_RS05280	0.12	-0.7
1,131,188	-		LRK54_RS05280	0.12	-0.4
1,131,188	-		LRK54_RS05280	0.12	+1.1
1,131,343	+		LRK54_RS05280	0.17	-2.1
1,131,343	+		LRK54_RS05280	0.17	-1.0
1,131,343	+		LRK54_RS05280	0.17	-1.3
1,131,343	+		LRK54_RS05280	0.17	+0.8
1,131,344	-		LRK54_RS05280	0.17	+0.3
1,131,344	-		LRK54_RS05280	0.17	+0.3
1,131,344	-		LRK54_RS05280	0.17	+0.3
1,131,424	+		LRK54_RS05280	0.20	-1.6
1,131,425	-		LRK54_RS05280	0.20	+0.8
1,131,425	-		LRK54_RS05280	0.20	-2.3
1,131,425	-		LRK54_RS05280	0.20	-0.5
1,131,425	-		LRK54_RS05280	0.20	+2.3
1,131,425	-		LRK54_RS05280	0.20	-0.1
1,131,425	-		LRK54_RS05280	0.20	-0.3
1,131,647	-		LRK54_RS05280	0.27	+0.8
1,131,647	-		LRK54_RS05280	0.27	-0.7
1,131,736	+		LRK54_RS05280	0.30	-1.2
1,131,736	+		LRK54_RS05280	0.30	+1.3
1,131,736	+		LRK54_RS05280	0.30	-0.3
1,131,737	-		LRK54_RS05280	0.30	+0.3
1,131,737	-		LRK54_RS05280	0.30	-0.1
1,131,737	-		LRK54_RS05280	0.30	+0.2
1,131,737	-		LRK54_RS05280	0.30	+0.5
1,131,904	+		LRK54_RS05280	0.36	-0.7
1,131,905	-		LRK54_RS05280	0.36	+0.9
1,131,905	-		LRK54_RS05280	0.36	-0.4
1,131,942	+		LRK54_RS05280	0.37	+0.5
1,131,943	+		LRK54_RS05280	0.37	+0.4
1,131,943	+		LRK54_RS05280	0.37	+0.4
1,131,944	-		LRK54_RS05280	0.37	-0.3
1,131,944	-		LRK54_RS05280	0.37	-2.3
1,132,517	-		LRK54_RS05280	0.57	-0.9
1,132,624	+		LRK54_RS05280	0.60	+1.5
1,132,624	+		LRK54_RS05280	0.60	-0.0
1,132,625	-		LRK54_RS05280	0.60	-1.0
1,132,625	-		LRK54_RS05280	0.60	-0.3
1,132,724	-		LRK54_RS05280	0.64	-0.4
1,132,732	+		LRK54_RS05280	0.64	+0.7
1,132,732	+		LRK54_RS05280	0.64	+0.7
1,132,732	+		LRK54_RS05280	0.64	-1.2
1,132,732	+		LRK54_RS05280	0.64	-0.7
1,132,732	+		LRK54_RS05280	0.64	-0.7
1,132,733	-		LRK54_RS05280	0.64	-2.0
1,132,733	-		LRK54_RS05280	0.64	-0.9
1,132,733	-		LRK54_RS05280	0.64	+2.4
1,132,733	-		LRK54_RS05280	0.64	+1.5
1,132,733	-		LRK54_RS05280	0.64	+1.3
1,132,733	-		LRK54_RS05280	0.64	-0.5
1,132,948	+		LRK54_RS05280	0.71	+0.8
1,132,948	+		LRK54_RS05280	0.71	+0.3
1,132,948	+		LRK54_RS05280	0.71	+1.0
1,132,949	-		LRK54_RS05280	0.71	-0.1
1,133,047	+		LRK54_RS05280	0.75	+0.6
1,133,048	-		LRK54_RS05280	0.75	-0.3
1,133,048	-		LRK54_RS05280	0.75	-1.2
1,133,092	+		LRK54_RS05280	0.76	+1.1
1,133,092	+		LRK54_RS05280	0.76	+0.5
1,133,093	-		LRK54_RS05280	0.76	-0.5
1,133,093	-		LRK54_RS05280	0.76	-0.5
1,133,093	-		LRK54_RS05280	0.76	+1.3
1,133,093	-		LRK54_RS05280	0.76	-0.6
1,133,093	-		LRK54_RS05280	0.76	+0.2
1,133,153	+		LRK54_RS05280	0.78	-0.4
1,133,153	+		LRK54_RS05280	0.78	-0.5
1,133,153	+		LRK54_RS05280	0.78	-0.3
1,133,153	+		LRK54_RS05280	0.78	-1.2
1,133,154	-		LRK54_RS05280	0.78	+1.8
1,133,181	+		LRK54_RS05280	0.79	+0.5
1,133,182	-		LRK54_RS05280	0.79	-0.9
1,133,326	+		LRK54_RS05280	0.84	+1.4
1,133,326	+		LRK54_RS05280	0.84	+0.2
1,133,326	+		LRK54_RS05280	0.84	+1.8
1,133,326	+		LRK54_RS05280	0.84	+1.0
1,133,326	+		LRK54_RS05280	0.84	-0.0
1,133,326	+		LRK54_RS05280	0.84	-0.7
1,133,326	+		LRK54_RS05280	0.84	+0.1
1,133,326	+		LRK54_RS05280	0.84	-0.4
1,133,326	+		LRK54_RS05280	0.84	+0.5
1,133,327	-		LRK54_RS05280	0.84	+2.4
1,133,327	-		LRK54_RS05280	0.84	-1.2
1,133,327	-		LRK54_RS05280	0.84	+0.5
1,133,327	-		LRK54_RS05280	0.84	-2.4
1,133,327	-		LRK54_RS05280	0.84	+2.1
1,133,327	-		LRK54_RS05280	0.84	-0.3
1,133,327	-		LRK54_RS05280	0.84	-0.4
1,133,327	-		LRK54_RS05280	0.84	+0.8
1,133,327	-		LRK54_RS05280	0.84	+0.1
1,133,327	-		LRK54_RS05280	0.84	-0.8
1,133,458	+		LRK54_RS05280	0.89	-1.1
1,133,459	-		LRK54_RS05280	0.89	+1.1
1,133,459	-		LRK54_RS05280	0.89	-2.5
1,133,488	+		LRK54_RS05280	0.90	-0.6
1,133,488	+		LRK54_RS05280	0.90	+0.4
1,133,488	+		LRK54_RS05280	0.90	-0.7
1,133,489	-		LRK54_RS05280	0.90	-0.7
1,133,489	-		LRK54_RS05280	0.90	+1.4
1,133,489	-		LRK54_RS05280	0.90	-1.2
1,133,489	-		LRK54_RS05280	0.90	+2.3
1,133,489	-		LRK54_RS05280	0.90	-0.3
1,133,489	-		LRK54_RS05280	0.90	+0.1
1,133,527	+				-0.1
1,133,528	-				+0.0
1,133,528	-				+0.8
1,133,528	-				+0.3
1,133,528	-				+0.1
1,133,660	-				+1.8
1,133,687	-				+0.3
1,133,687	-				-0.2
1,133,999	+				+0.6
1,133,999	+				+0.3
1,133,999	+				+0.0
1,133,999	+				-0.1
1,133,999	+				-0.5
1,133,999	+				+0.0
1,133,999	+				+0.6
1,133,999	+				-0.3
1,133,999	+				+0.3
1,133,999	+				+1.0
1,133,999	+				-0.5
1,133,999	+				+0.8
1,133,999	+				-0.5
1,133,999	+				-1.3
1,133,999	+				+0.6
1,133,999	+				-2.2
1,133,999	+				-1.0
1,133,999	+				+0.6
1,133,999	+				-0.2
1,133,999	+				+0.4
1,133,999	+				+1.4
1,134,000	-				+0.1
1,134,000	-				+1.1
1,134,000	-				-0.1
1,134,000	-				-0.5
1,134,000	-				-0.0
1,134,000	-				-0.6
1,134,000	-				+1.8
1,134,000	-				-2.0
1,134,000	-				-1.1
1,134,000	-				+1.7
1,134,000	-				+0.4
1,134,000	-				-1.5
1,134,000	-				+0.3
1,134,000	-				+0.5
1,134,000	-				+0.6
1,134,000	-				-0.3
1,134,000	-				-0.5
1,134,000	-				+0.4
1,134,000	-				-0.1
1,134,247	+				+0.1
1,134,247	+				-1.0
1,134,247	+				-1.3
1,134,247	+				+1.1
1,134,247	+				+0.5
1,134,247	+				-0.3
1,134,247	+				+0.2
1,134,247	+				-1.0
1,134,247	+				-2.1
1,134,248	-				+0.8
1,134,248	-				+0.2
1,134,248	-				-1.0
1,134,248	-				+0.3
1,134,304	+		LRK54_RS05285	0.13	+0.9
1,134,304	+		LRK54_RS05285	0.13	-1.3
1,134,305	-		LRK54_RS05285	0.13	+0.4
1,134,305	-		LRK54_RS05285	0.13	-1.2
1,134,305	-		LRK54_RS05285	0.13	-0.5
1,134,400	+		LRK54_RS05285	0.18	+0.2
1,134,400	+		LRK54_RS05285	0.18	+1.1
1,134,400	+		LRK54_RS05285	0.18	-1.1
1,134,400	+		LRK54_RS05285	0.18	-0.2
1,134,400	+		LRK54_RS05285	0.18	+0.2
1,134,400	+		LRK54_RS05285	0.18	+2.6
1,134,400	+		LRK54_RS05285	0.18	-1.3
1,134,400	+		LRK54_RS05285	0.18	-0.2
1,134,400	+		LRK54_RS05285	0.18	-2.2
1,134,400	+		LRK54_RS05285	0.18	-1.1
1,134,400	+		LRK54_RS05285	0.18	-0.0
1,134,400	+		LRK54_RS05285	0.18	-0.7
1,134,400	+		LRK54_RS05285	0.18	-0.8
1,134,400	+		LRK54_RS05285	0.18	-0.2
1,134,401	-		LRK54_RS05285	0.18	+2.1
1,134,401	-		LRK54_RS05285	0.18	-1.2
1,134,401	-		LRK54_RS05285	0.18	-0.1
1,134,401	-		LRK54_RS05285	0.18	-0.9
1,134,401	-		LRK54_RS05285	0.18	+0.8
1,134,401	-		LRK54_RS05285	0.18	+0.5
1,134,401	-		LRK54_RS05285	0.18	-0.7
1,134,401	-		LRK54_RS05285	0.18	-0.4
1,134,401	-		LRK54_RS05285	0.18	+0.5
1,134,401	-		LRK54_RS05285	0.18	+0.1
1,134,401	-		LRK54_RS05285	0.18	+0.0
1,134,439	+		LRK54_RS05285	0.20	-1.6
1,134,439	+		LRK54_RS05285	0.20	+1.8
1,134,439	+		LRK54_RS05285	0.20	-0.5
1,134,439	+		LRK54_RS05285	0.20	+0.4
1,134,440	-		LRK54_RS05285	0.20	+0.5
1,134,440	-		LRK54_RS05285	0.20	+0.0
1,134,440	-		LRK54_RS05285	0.20	+0.3
1,134,440	-		LRK54_RS05285	0.20	+0.2
1,134,514	+		LRK54_RS05285	0.24	+0.7
1,134,514	+		LRK54_RS05285	0.24	+0.3
1,134,514	+		LRK54_RS05285	0.24	-1.7
1,134,514	+		LRK54_RS05285	0.24	+0.3
1,134,514	+		LRK54_RS05285	0.24	-1.3
1,134,514	+		LRK54_RS05285	0.24	-1.2
1,134,514	+		LRK54_RS05285	0.24	+0.3
1,134,514	+		LRK54_RS05285	0.24	-1.1
1,134,514	+		LRK54_RS05285	0.24	+0.0
1,134,514	+		LRK54_RS05285	0.24	+0.3
1,134,514	+		LRK54_RS05285	0.24	-0.2
1,134,514	+		LRK54_RS05285	0.24	+3.8
1,134,514	+		LRK54_RS05285	0.24	-0.1
1,134,514	+		LRK54_RS05285	0.24	-0.8
1,134,514	+		LRK54_RS05285	0.24	+0.8
1,134,514	+		LRK54_RS05285	0.24	-0.3
1,134,514	+		LRK54_RS05285	0.24	-2.8
1,134,515	-		LRK54_RS05285	0.24	-0.4
1,134,515	-		LRK54_RS05285	0.24	-0.1
1,134,515	-		LRK54_RS05285	0.24	+0.3
1,134,515	-		LRK54_RS05285	0.24	-2.0
1,134,515	-		LRK54_RS05285	0.24	+0.8
1,134,515	-		LRK54_RS05285	0.24	+0.2
1,134,515	-		LRK54_RS05285	0.24	+0.8
1,134,515	-		LRK54_RS05285	0.24	+1.6
1,134,515	-		LRK54_RS05285	0.24	-4.2
1,134,515	-		LRK54_RS05285	0.24	+1.6