Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides MMP_RS04990 and MMP_RS04995 are separated by 124 nucleotides MMP_RS04995 and MMP_RS05000 are separated by 49 nucleotides
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459
_RS04995
MMP_RS05000: MMP_RS05000 - FmdE family protein, at 952,509 to 953,087
_RS05000
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand at 952.128 kb on + strand at 952.176 kb on + strand at 952.176 kb on + strand at 952.180 kb on + strand at 952.199 kb on + strand at 952.318 kb on - strand, within MMP_RS04995 at 952.319 kb on + strand, within MMP_RS04995 at 952.375 kb on - strand, within MMP_RS04995 at 952.387 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.430 kb on - strand, within MMP_RS04995 at 952.436 kb on - strand at 952.436 kb on - strand at 952.456 kb on + strand at 952.487 kb on - strand at 952.501 kb on - strand at 952.510 kb on - strand at 952.546 kb on + strand at 952.559 kb on - strand at 952.560 kb on + strand at 952.580 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.704 kb on + strand, within MMP_RS05000 at 952.855 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.947 kb on + strand, within MMP_RS05000 at 952.957 kb on + strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.006 kb on + strand, within MMP_RS05000 at 953.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 950,359 - MMP_RS04980 0.50 -0.6 950,360 + MMP_RS04980 0.50 -1.6 950,401 - MMP_RS04980 0.53 -1.4 950,406 + MMP_RS04980 0.53 -1.0 950,416 + MMP_RS04980 0.54 -0.9 950,416 + MMP_RS04980 0.54 -0.9 950,416 + MMP_RS04980 0.54 -0.8 950,416 + MMP_RS04980 0.54 -1.3 950,522 - MMP_RS04980 0.61 +0.7 950,523 + MMP_RS04980 0.61 -0.8 950,566 - MMP_RS04980 0.64 -0.8 950,567 + MMP_RS04980 0.64 -0.3 950,567 + MMP_RS04980 0.64 -1.2 950,609 - MMP_RS04980 0.67 -0.7 950,609 - MMP_RS04980 0.67 -0.6 950,648 + MMP_RS04980 0.69 +0.6 950,677 + MMP_RS04980 0.71 -2.8 950,681 + MMP_RS04980 0.71 +0.4 950,746 + MMP_RS04980 0.76 -1.1 950,746 + MMP_RS04980 0.76 -0.1 950,747 - MMP_RS04980 0.76 -0.9 950,761 - MMP_RS04980 0.77 -0.9 950,865 + MMP_RS04980 0.84 -0.4 950,884 + MMP_RS04980 0.85 -1.3 951,085 + -0.3 951,107 + -0.4 951,108 - -1.9 951,113 - -1.2 951,114 + -0.9 951,120 + -0.1 951,156 + -1.6 951,238 + MMP_RS04985 0.43 -0.6 951,238 + MMP_RS04985 0.43 -1.6 951,240 - MMP_RS04985 0.44 -1.2 951,241 + MMP_RS04985 0.44 -1.4 951,241 + MMP_RS04985 0.44 -0.4 951,335 + MMP_RS04985 0.88 +0.3 951,565 + MMP_RS04990 0.29 -0.3 951,565 + MMP_RS04990 0.29 -0.7 951,636 - MMP_RS04990 0.39 -1.3 951,644 - MMP_RS04990 0.40 -1.3 951,647 + MMP_RS04990 0.40 -1.4 951,648 - MMP_RS04990 0.40 -0.9 951,649 + MMP_RS04990 0.40 -0.3 951,649 + MMP_RS04990 0.40 -0.4 951,762 + MMP_RS04990 0.56 -0.3 951,973 + MMP_RS04990 0.85 -2.7 951,995 + MMP_RS04990 0.88 -0.5 951,998 + MMP_RS04990 0.89 -3.7 952,007 - +0.1 952,009 - -1.4 952,009 - -2.6 952,009 - +0.0 952,009 - -1.8 952,010 + -1.9 952,010 + -1.0 952,010 + +0.7 952,011 - -0.4 952,011 - -1.3 952,012 + -0.1 952,012 + -0.5 952,012 + -1.6 952,012 + -0.9 952,037 - -1.2 952,037 - -0.9 952,037 - -0.3 952,037 - -1.1 952,038 + +0.1 952,038 + +0.2 952,054 - -1.8 952,054 - -0.7 952,054 - -1.3 952,075 - -0.5 952,075 - -1.0 952,128 + +0.5 952,176 + -1.0 952,176 + -0.0 952,180 + +0.8 952,199 + +1.2 952,318 - MMP_RS04995 0.45 -0.6 952,319 + MMP_RS04995 0.45 +0.4 952,375 - MMP_RS04995 0.67 -0.3 952,387 + MMP_RS04995 0.72 -1.1 952,392 + MMP_RS04995 0.74 -0.8 952,392 + MMP_RS04995 0.74 +0.3 952,393 - MMP_RS04995 0.74 +0.8 952,393 - MMP_RS04995 0.74 +1.0 952,393 - MMP_RS04995 0.74 -1.2 952,394 + MMP_RS04995 0.74 +1.4 952,394 + MMP_RS04995 0.74 -0.3 952,394 + MMP_RS04995 0.74 +0.8 952,394 + MMP_RS04995 0.74 -0.0 952,394 + MMP_RS04995 0.74 -0.3 952,394 + MMP_RS04995 0.74 +0.3 952,394 + MMP_RS04995 0.74 +0.3 952,430 - MMP_RS04995 0.88 +0.4 952,436 - -0.7 952,436 - +0.5 952,456 + +0.5 952,487 - +0.8 952,501 - -0.8 952,510 - +0.6 952,546 + -0.2 952,559 - -0.5 952,560 + -0.2 952,580 - MMP_RS05000 0.12 +0.5 952,659 - MMP_RS05000 0.26 +0.4 952,659 - MMP_RS05000 0.26 +0.1 952,704 + MMP_RS05000 0.34 -1.7 952,855 - MMP_RS05000 0.60 -0.1 952,934 - MMP_RS05000 0.73 -0.5 952,934 - MMP_RS05000 0.73 +0.1 952,934 - MMP_RS05000 0.73 -0.1 952,938 + MMP_RS05000 0.74 +0.0 952,938 + MMP_RS05000 0.74 +0.4 952,947 + MMP_RS05000 0.76 -0.1 952,957 + MMP_RS05000 0.77 -0.6 953,005 - MMP_RS05000 0.86 +0.0 953,005 - MMP_RS05000 0.86 +0.1 953,006 + MMP_RS05000 0.86 +0.3 953,031 + +0.1
Or see this region's nucleotide sequence