Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01295

Experiment: McCas_formate_complete no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01285 and MMP_RS01290 are separated by 33 nucleotidesMMP_RS01290 and MMP_RS01295 overlap by 23 nucleotidesMMP_RS01295 and MMP_RS01300 are separated by 51 nucleotidesMMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528 _RS01285 MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960 _RS01290 MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393 _RS01295 MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930 _RS01300 MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789 _RS01305 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 243.008 kb on - strand, within MMP_RS01285at 243.009 kb on + strand, within MMP_RS01285at 243.011 kb on - strand, within MMP_RS01285at 243.015 kb on - strand, within MMP_RS01285at 243.072 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.188 kb on - strand, within MMP_RS01285at 243.239 kb on - strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.393 kb on + strand, within MMP_RS01285at 243.437 kb on + strand, within MMP_RS01285at 243.439 kb on + strandat 243.442 kb on + strandat 243.532 kb on + strandat 243.558 kb on - strandat 243.629 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.849 kb on - strand, within MMP_RS01290at 243.850 kb on + strand, within MMP_RS01290at 243.855 kb on - strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.877 kb on - strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.999 kb on - strand, within MMP_RS01295at 244.000 kb on + strand, within MMP_RS01295at 244.131 kb on + strand, within MMP_RS01295at 244.185 kb on + strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.191 kb on - strand, within MMP_RS01295at 244.214 kb on + strand, within MMP_RS01295at 244.229 kb on + strand, within MMP_RS01295at 244.288 kb on - strand, within MMP_RS01295at 244.313 kb on + strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.381 kb on - strandat 244.407 kb on + strandat 244.414 kb on + strandat 244.439 kb on - strandat 244.441 kb on - strandat 244.471 kb on - strandat 244.472 kb on + strandat 244.491 kb on - strandat 244.534 kb on + strand, within MMP_RS01300at 244.588 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.607 kb on + strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.667 kb on - strand, within MMP_RS01300at 244.733 kb on + strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.742 kb on + strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.799 kb on + strand, within MMP_RS01300at 244.980 kb on - strandat 245.022 kb on - strand, within MMP_RS01305at 245.133 kb on - strand, within MMP_RS01305at 245.151 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.242 kb on - strand, within MMP_RS01305at 245.248 kb on + strand, within MMP_RS01305at 245.253 kb on + strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.267 kb on + strand, within MMP_RS01305at 245.271 kb on - strand, within MMP_RS01305at 245.274 kb on - strand, within MMP_RS01305at 245.293 kb on + strand, within MMP_RS01305at 245.297 kb on - strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.339 kb on - strand, within MMP_RS01305

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control
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243,008 - MMP_RS01285 0.42 -0.5
243,009 + MMP_RS01285 0.42 +0.1
243,011 - MMP_RS01285 0.42 -0.6
243,015 - MMP_RS01285 0.43 -0.9
243,072 + MMP_RS01285 0.49 -0.4
243,114 + MMP_RS01285 0.54 -0.4
243,114 + MMP_RS01285 0.54 -0.8
243,188 - MMP_RS01285 0.62 -0.2
243,239 - MMP_RS01285 0.68 -1.0
243,292 + MMP_RS01285 0.73 -1.1
243,292 + MMP_RS01285 0.73 -1.8
243,292 + MMP_RS01285 0.73 -1.9
243,393 + MMP_RS01285 0.85 -0.1
243,437 + MMP_RS01285 0.90 +0.1
243,439 + -0.3
243,442 + -0.6
243,532 + +1.1
243,558 - -0.5
243,629 - MMP_RS01290 0.17 -0.5
243,843 - MMP_RS01290 0.70 -0.2
243,843 - MMP_RS01290 0.70 +0.1
243,844 + MMP_RS01290 0.71 -0.9
243,844 + MMP_RS01290 0.71 -2.4
243,845 - MMP_RS01290 0.71 -0.1
243,845 - MMP_RS01290 0.71 -0.6
243,846 + MMP_RS01290 0.71 -0.1
243,846 + MMP_RS01290 0.71 -0.9
243,849 - MMP_RS01290 0.72 -0.8
243,850 + MMP_RS01290 0.72 -1.6
243,855 - MMP_RS01290 0.73 -1.0
243,870 + MMP_RS01290 0.77 -1.6
243,870 + MMP_RS01290 0.77 -0.4
243,877 - MMP_RS01290 0.79 -0.6
243,878 + MMP_RS01290 0.79 -1.2
243,878 + MMP_RS01290 0.79 -0.8
243,879 - MMP_RS01290 0.79 -0.6
243,879 - MMP_RS01290 0.79 -1.5
243,884 + MMP_RS01290 0.81 -0.4
243,884 + MMP_RS01290 0.81 -0.6
243,999 - MMP_RS01295 0.13 -0.9
244,000 + MMP_RS01295 0.14 -0.6
244,131 + MMP_RS01295 0.42 -0.4
244,185 + MMP_RS01295 0.54 -0.4
244,189 - MMP_RS01295 0.55 -0.0
244,189 - MMP_RS01295 0.55 -0.5
244,190 + MMP_RS01295 0.55 -0.5
244,190 + MMP_RS01295 0.55 -0.8
244,190 + MMP_RS01295 0.55 -0.4
244,191 - MMP_RS01295 0.55 -0.6
244,214 + MMP_RS01295 0.61 -1.0
244,229 + MMP_RS01295 0.64 +0.0
244,288 - MMP_RS01295 0.77 -0.9
244,313 + MMP_RS01295 0.82 -0.9
244,336 - MMP_RS01295 0.87 -0.5
244,336 - MMP_RS01295 0.87 -0.4
244,336 - MMP_RS01295 0.87 -1.8
244,336 - MMP_RS01295 0.87 -0.7
244,336 - MMP_RS01295 0.87 -1.9
244,337 + MMP_RS01295 0.88 -0.4
244,337 + MMP_RS01295 0.88 -0.4
244,381 - -0.4
244,407 + -0.3
244,414 + +0.0
244,439 - -0.5
244,441 - +0.6
244,471 - +0.2
244,472 + +0.4
244,491 - +2.1
244,534 + MMP_RS01300 0.18 -0.7
244,588 - MMP_RS01300 0.29 +0.6
244,606 - MMP_RS01300 0.33 +0.3
244,606 - MMP_RS01300 0.33 -0.6
244,606 - MMP_RS01300 0.33 +0.7
244,606 - MMP_RS01300 0.33 +0.4
244,606 - MMP_RS01300 0.33 -0.4
244,606 - MMP_RS01300 0.33 +0.9
244,607 + MMP_RS01300 0.33 +1.1
244,610 - MMP_RS01300 0.34 +0.5
244,610 - MMP_RS01300 0.34 -0.2
244,610 - MMP_RS01300 0.34 +0.5
244,610 - MMP_RS01300 0.34 +0.2
244,610 - MMP_RS01300 0.34 +0.2
244,610 - MMP_RS01300 0.34 +0.3
244,610 - MMP_RS01300 0.34 -1.0
244,610 - MMP_RS01300 0.34 +0.1
244,611 + MMP_RS01300 0.34 +1.0
244,611 + MMP_RS01300 0.34 -0.3
244,611 + MMP_RS01300 0.34 -0.5
244,612 - MMP_RS01300 0.34 -0.4
244,612 - MMP_RS01300 0.34 -0.2
244,612 - MMP_RS01300 0.34 -0.6
244,612 - MMP_RS01300 0.34 +0.2
244,612 - MMP_RS01300 0.34 +0.0
244,613 + MMP_RS01300 0.35 +0.3
244,613 + MMP_RS01300 0.35 -0.1
244,613 + MMP_RS01300 0.35 +0.2
244,614 - MMP_RS01300 0.35 +1.2
244,614 - MMP_RS01300 0.35 +0.3
244,615 + MMP_RS01300 0.35 -0.0
244,615 + MMP_RS01300 0.35 +0.5
244,623 + MMP_RS01300 0.37 -0.6
244,623 + MMP_RS01300 0.37 +1.1
244,653 - MMP_RS01300 0.43 +0.4
244,653 - MMP_RS01300 0.43 -0.0
244,664 + MMP_RS01300 0.45 -0.5
244,664 + MMP_RS01300 0.45 -0.7
244,667 - MMP_RS01300 0.46 +0.3
244,733 + MMP_RS01300 0.59 -0.4
244,735 - MMP_RS01300 0.60 -0.4
244,735 - MMP_RS01300 0.60 +0.2
244,742 + MMP_RS01300 0.61 +0.1
244,798 - MMP_RS01300 0.73 -0.0
244,798 - MMP_RS01300 0.73 -1.0
244,799 + MMP_RS01300 0.73 +0.3
244,980 - -1.2
245,022 - MMP_RS01305 0.10 -0.4
245,133 - MMP_RS01305 0.23 -0.8
245,151 - MMP_RS01305 0.26 -0.6
245,154 - MMP_RS01305 0.26 +0.5
245,154 - MMP_RS01305 0.26 -1.0
245,154 - MMP_RS01305 0.26 -0.1
245,155 + MMP_RS01305 0.26 -0.4
245,155 + MMP_RS01305 0.26 -0.0
245,155 + MMP_RS01305 0.26 -0.5
245,155 + MMP_RS01305 0.26 -0.4
245,203 + MMP_RS01305 0.32 -1.4
245,203 + MMP_RS01305 0.32 -0.7
245,242 - MMP_RS01305 0.36 +0.0
245,248 + MMP_RS01305 0.37 -1.3
245,253 + MMP_RS01305 0.37 -0.4
245,266 - MMP_RS01305 0.39 +0.3
245,266 - MMP_RS01305 0.39 +0.2
245,266 - MMP_RS01305 0.39 -0.2
245,266 - MMP_RS01305 0.39 -0.6
245,267 + MMP_RS01305 0.39 -0.2
245,271 - MMP_RS01305 0.40 -1.4
245,274 - MMP_RS01305 0.40 -0.9
245,293 + MMP_RS01305 0.42 -1.6
245,297 - MMP_RS01305 0.43 -0.4
245,298 + MMP_RS01305 0.43 +0.1
245,298 + MMP_RS01305 0.43 -1.0
245,339 - MMP_RS01305 0.47 -0.5

Or see this region's nucleotide sequence