Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01445

Experiment: McCas_formate_complete phosphite 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01435 and MMP_RS01440 are separated by 39 nucleotidesMMP_RS01440 and MMP_RS01445 are separated by 19 nucleotidesMMP_RS01445 and MMP_RS01450 are separated by 13 nucleotides MMP_RS01435: MMP_RS01435 - DMT family transporter, at 265,936 to 266,379 _RS01435 MMP_RS01440: MMP_RS01440 - NAAT family transporter, at 266,419 to 267,060 _RS01440 MMP_RS01445: MMP_RS01445 - hypothetical protein, at 267,080 to 267,796 _RS01445 MMP_RS01450: MMP_RS01450 - tRNA pseudouridine(38-40) synthase TruA, at 267,810 to 268,598 _RS01450 Position (kb) 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1at 266.141 kb on - strand, within MMP_RS01435at 266.204 kb on - strand, within MMP_RS01435at 266.325 kb on - strand, within MMP_RS01435at 266.346 kb on + strandat 266.500 kb on - strand, within MMP_RS01440at 266.932 kb on + strand, within MMP_RS01440at 266.935 kb on - strand, within MMP_RS01440at 266.935 kb on - strand, within MMP_RS01440at 266.936 kb on + strand, within MMP_RS01440at 266.971 kb on + strand, within MMP_RS01440at 267.156 kb on - strand, within MMP_RS01445at 267.161 kb on - strand, within MMP_RS01445at 267.199 kb on - strand, within MMP_RS01445at 267.307 kb on - strand, within MMP_RS01445at 267.307 kb on - strand, within MMP_RS01445at 267.441 kb on - strand, within MMP_RS01445at 267.460 kb on - strand, within MMP_RS01445at 267.506 kb on - strand, within MMP_RS01445at 267.577 kb on + strand, within MMP_RS01445at 267.702 kb on + strand, within MMP_RS01445at 267.764 kb on - strandat 267.765 kb on + strandat 267.790 kb on + strandat 267.790 kb on + strandat 267.790 kb on + strandat 267.904 kb on - strand, within MMP_RS01450at 267.904 kb on - strand, within MMP_RS01450at 267.904 kb on - strand, within MMP_RS01450at 267.905 kb on + strand, within MMP_RS01450at 267.905 kb on + strand, within MMP_RS01450at 267.926 kb on - strand, within MMP_RS01450at 267.930 kb on + strand, within MMP_RS01450at 267.988 kb on - strand, within MMP_RS01450at 268.037 kb on - strand, within MMP_RS01450at 268.107 kb on - strand, within MMP_RS01450at 268.279 kb on + strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.413 kb on - strand, within MMP_RS01450at 268.418 kb on + strand, within MMP_RS01450at 268.434 kb on - strand, within MMP_RS01450at 268.587 kb on + strandat 268.587 kb on + strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.594 kb on - strandat 268.594 kb on - strandat 268.602 kb on + strandat 268.602 kb on + strandat 268.610 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.613 kb on + strandat 268.657 kb on - strandat 268.657 kb on - strandat 268.657 kb on - strandat 268.660 kb on + strandat 268.694 kb on - strandat 268.694 kb on - strandat 268.701 kb on + strandat 268.703 kb on - strandat 268.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete phosphite 100 mM
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266,141 - MMP_RS01435 0.46 +0.7
266,204 - MMP_RS01435 0.60 +0.1
266,325 - MMP_RS01435 0.88 +0.4
266,346 + +0.0
266,500 - MMP_RS01440 0.13 -0.8
266,932 + MMP_RS01440 0.80 -0.0
266,935 - MMP_RS01440 0.80 -0.1
266,935 - MMP_RS01440 0.80 +0.1
266,936 + MMP_RS01440 0.81 -0.1
266,971 + MMP_RS01440 0.86 -0.3
267,156 - MMP_RS01445 0.11 -0.3
267,161 - MMP_RS01445 0.11 -0.9
267,199 - MMP_RS01445 0.17 +0.4
267,307 - MMP_RS01445 0.32 -0.7
267,307 - MMP_RS01445 0.32 -2.1
267,441 - MMP_RS01445 0.50 -2.5
267,460 - MMP_RS01445 0.53 -0.7
267,506 - MMP_RS01445 0.59 -0.9
267,577 + MMP_RS01445 0.69 -0.9
267,702 + MMP_RS01445 0.87 -1.1
267,764 - -0.7
267,765 + -1.4
267,790 + -0.3
267,790 + -1.9
267,790 + -3.6
267,904 - MMP_RS01450 0.12 -1.5
267,904 - MMP_RS01450 0.12 -1.7
267,904 - MMP_RS01450 0.12 +1.3
267,905 + MMP_RS01450 0.12 -0.8
267,905 + MMP_RS01450 0.12 -0.4
267,926 - MMP_RS01450 0.15 -0.3
267,930 + MMP_RS01450 0.15 -0.4
267,988 - MMP_RS01450 0.23 -0.1
268,037 - MMP_RS01450 0.29 +0.2
268,107 - MMP_RS01450 0.38 +0.6
268,279 + MMP_RS01450 0.59 -0.9
268,283 - MMP_RS01450 0.60 +0.0
268,283 - MMP_RS01450 0.60 -1.2
268,283 - MMP_RS01450 0.60 -0.5
268,283 - MMP_RS01450 0.60 -2.1
268,284 + MMP_RS01450 0.60 +1.0
268,284 + MMP_RS01450 0.60 -0.3
268,284 + MMP_RS01450 0.60 +0.2
268,413 - MMP_RS01450 0.76 -0.1
268,418 + MMP_RS01450 0.77 +0.2
268,434 - MMP_RS01450 0.79 -0.5
268,587 + +0.3
268,587 + -0.7
268,590 - +0.4
268,590 - -0.8
268,594 - +0.5
268,594 - +0.0
268,602 + -0.8
268,602 + -0.6
268,610 - -0.5
268,612 - -0.7
268,612 - -0.0
268,612 - -0.6
268,612 - +1.5
268,613 + +0.3
268,657 - +0.0
268,657 - -0.2
268,657 - -1.3
268,660 + +0.1
268,694 - +0.1
268,694 - -0.4
268,701 + -0.0
268,703 - +0.9
268,704 + +0.2

Or see this region's nucleotide sequence