Experiment: McCas_formate_complete mercury (II) chloride 0.227272727272727 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03530 and MMP_RS03535 are separated by 241 nucleotides MMP_RS03535 and MMP_RS03540 are separated by 10 nucleotides MMP_RS03540 and MMP_RS03545 are separated by 136 nucleotides MMP_RS03545 and MMP_RS03550 are separated by 95 nucleotides MMP_RS03550 and MMP_RS03555 are separated by 122 nucleotides
MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571
_RS03530
MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016
_RS03535
MMP_RS03540: MMP_RS03540 - DUF2178 domain-containing protein, at 663,027 to 663,413
_RS03540
MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947
_RS03545
MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519
_RS03550
MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622
_RS03555
Position (kb) 663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 662.558 kb on + strand at 662.573 kb on - strand at 662.592 kb on + strand at 662.600 kb on + strand at 662.629 kb on - strand at 662.802 kb on - strand at 662.803 kb on + strand at 662.824 kb on - strand at 662.833 kb on + strand at 662.840 kb on - strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 663.020 kb on - strand at 663.029 kb on + strand at 663.050 kb on - strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.062 kb on - strand at 663.125 kb on - strand, within MMP_RS03540 at 663.272 kb on - strand, within MMP_RS03540 at 663.300 kb on - strand, within MMP_RS03540 at 663.302 kb on - strand, within MMP_RS03540 at 663.303 kb on + strand, within MMP_RS03540 at 663.306 kb on - strand, within MMP_RS03540 at 663.309 kb on - strand, within MMP_RS03540 at 663.310 kb on + strand, within MMP_RS03540 at 663.323 kb on + strand, within MMP_RS03540 at 663.370 kb on + strand, within MMP_RS03540 at 663.523 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.576 kb on + strand at 663.906 kb on - strand, within MMP_RS03545 at 663.994 kb on + strand, within MMP_RS03545 at 664.021 kb on - strand, within MMP_RS03545 at 664.239 kb on - strand, within MMP_RS03545 at 664.295 kb on + strand, within MMP_RS03545 at 664.297 kb on - strand, within MMP_RS03545 at 664.552 kb on - strand, within MMP_RS03545 at 664.579 kb on - strand, within MMP_RS03545 at 664.683 kb on + strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.728 kb on - strand, within MMP_RS03545 at 664.751 kb on - strand, within MMP_RS03545 at 664.752 kb on + strand, within MMP_RS03545 at 664.809 kb on - strand at 664.855 kb on - strand at 664.859 kb on + strand at 664.942 kb on - strand at 664.953 kb on - strand at 664.982 kb on + strand at 664.984 kb on - strand at 665.278 kb on + strand, within MMP_RS03550 at 665.353 kb on - strand, within MMP_RS03550 at 665.478 kb on - strand at 665.546 kb on + strand at 665.552 kb on - strand at 665.552 kb on - strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.556 kb on + strand at 665.556 kb on + strand at 665.578 kb on + strand at 665.754 kb on - strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.788 kb on - strand, within MMP_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete mercury (II) chloride 0.227272727272727 mM remove 662,558 + +0.3 662,573 - +0.2 662,592 + +0.0 662,600 + -0.9 662,629 - -0.4 662,802 - -0.2 662,803 + +0.1 662,824 - -0.5 662,833 + +0.2 662,840 - MMP_RS03535 0.13 -0.4 662,841 + MMP_RS03535 0.14 +0.1 662,841 + MMP_RS03535 0.14 -0.2 663,020 - -0.3 663,029 + +0.1 663,050 - -2.9 663,059 + -0.3 663,059 + +0.6 663,059 + -0.3 663,062 - +0.0 663,125 - MMP_RS03540 0.25 -0.3 663,272 - MMP_RS03540 0.63 +0.8 663,300 - MMP_RS03540 0.71 -0.2 663,302 - MMP_RS03540 0.71 +0.4 663,303 + MMP_RS03540 0.71 -0.6 663,306 - MMP_RS03540 0.72 +0.2 663,309 - MMP_RS03540 0.73 +3.2 663,310 + MMP_RS03540 0.73 -0.0 663,323 + MMP_RS03540 0.76 -0.7 663,370 + MMP_RS03540 0.89 +0.2 663,523 - +0.4 663,573 - -0.5 663,573 - +0.2 663,573 - -0.1 663,573 - +0.5 663,576 + +5.3 663,906 - MMP_RS03545 0.25 -0.4 663,994 + MMP_RS03545 0.32 -0.7 664,021 - MMP_RS03545 0.34 -0.2 664,239 - MMP_RS03545 0.49 -0.6 664,295 + MMP_RS03545 0.53 +0.0 664,297 - MMP_RS03545 0.53 -0.3 664,552 - MMP_RS03545 0.72 +0.3 664,579 - MMP_RS03545 0.74 -0.3 664,683 + MMP_RS03545 0.81 +0.2 664,726 - MMP_RS03545 0.84 -1.0 664,726 - MMP_RS03545 0.84 +0.0 664,726 - MMP_RS03545 0.84 -0.2 664,728 - MMP_RS03545 0.84 -0.3 664,751 - MMP_RS03545 0.86 -0.6 664,752 + MMP_RS03545 0.86 -0.3 664,809 - +0.9 664,855 - -0.0 664,859 + +0.1 664,942 - +0.3 664,953 - -0.7 664,982 + +0.7 664,984 - +0.7 665,278 + MMP_RS03550 0.49 +0.8 665,353 - MMP_RS03550 0.65 -0.8 665,478 - -0.0 665,546 + +0.2 665,552 - +0.4 665,552 - -1.9 665,553 + +0.5 665,553 + -0.5 665,553 + +0.1 665,556 + -0.3 665,556 + +0.3 665,578 + +1.2 665,754 - MMP_RS03555 0.11 -0.4 665,785 + MMP_RS03555 0.15 +0.1 665,785 + MMP_RS03555 0.15 +0.4 665,788 - MMP_RS03555 0.15 -1.2
Or see this region's nucleotide sequence