Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00835

Experiment: McCas_formate_complete arsenate 0.416666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00825 and MMP_RS00830 are separated by 15 nucleotidesMMP_RS00830 and MMP_RS00835 are separated by 31 nucleotidesMMP_RS00835 and MMP_RS00840 are separated by 14 nucleotides MMP_RS00825: MMP_RS00825 - fumarylacetoacetate hydrolase family protein, at 154,198 to 154,806 _RS00825 MMP_RS00830: MMP_RS00830 - purine phosphoribosyltransferase family protein, at 154,822 to 155,379 _RS00830 MMP_RS00835: MMP_RS00835 - FAD-dependent oxidoreductase, at 155,411 to 156,817 _RS00835 MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710 _RS00840 Position (kb) 155 156 157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 154.681 kb on + strand, within MMP_RS00825at 154.684 kb on - strand, within MMP_RS00825at 154.684 kb on - strand, within MMP_RS00825at 154.711 kb on - strand, within MMP_RS00825at 154.740 kb on - strand, within MMP_RS00825at 154.798 kb on - strandat 155.145 kb on + strand, within MMP_RS00830at 155.309 kb on + strand, within MMP_RS00830at 155.443 kb on + strandat 155.616 kb on - strandat 155.638 kb on - strandat 155.663 kb on + strandat 155.777 kb on + strandat 156.052 kb on + strandat 156.133 kb on - strandat 156.168 kb on + strandat 156.194 kb on + strandat 156.256 kb on - strandat 156.260 kb on - strandat 156.560 kb on - strandat 156.561 kb on + strandat 156.565 kb on + strandat 156.565 kb on + strandat 156.565 kb on + strandat 156.597 kb on - strandat 156.734 kb on - strandat 156.737 kb on - strandat 156.740 kb on - strandat 156.943 kb on + strandat 156.962 kb on - strandat 157.191 kb on - strandat 157.766 kb on - strandat 157.767 kb on + strandat 157.770 kb on + strandat 157.770 kb on + strandat 157.774 kb on + strandat 157.775 kb on - strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.791 kb on - strandat 157.807 kb on - strandat 157.812 kb on - strandat 157.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete arsenate 0.416666666666667 mM
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154,681 + MMP_RS00825 0.79 -0.1
154,684 - MMP_RS00825 0.80 -1.1
154,684 - MMP_RS00825 0.80 -0.2
154,711 - MMP_RS00825 0.84 +0.2
154,740 - MMP_RS00825 0.89 +0.8
154,798 - -2.2
155,145 + MMP_RS00830 0.58 +0.2
155,309 + MMP_RS00830 0.87 +3.6
155,443 + -0.7
155,616 - -2.7
155,638 - +1.4
155,663 + +0.1
155,777 + -0.5
156,052 + -3.5
156,133 - -0.8
156,168 + -1.4
156,194 + -2.4
156,256 - -0.8
156,260 - -3.6
156,560 - +0.7
156,561 + -2.6
156,565 + -1.0
156,565 + -2.8
156,565 + -3.6
156,597 - -1.1
156,734 - +0.2
156,737 - -1.4
156,740 - -2.1
156,943 + +0.7
156,962 - -1.0
157,191 - -2.1
157,766 - -0.4
157,767 + +0.9
157,770 + -4.2
157,770 + -1.1
157,774 + +1.4
157,775 - -0.1
157,789 + +0.8
157,789 + -1.5
157,789 + -0.8
157,789 + +0.8
157,791 - -0.9
157,807 - -0.9
157,812 - +0.6
157,813 + +0.2

Or see this region's nucleotide sequence