Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06975

Experiment: McCas_formate_complete no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06965 and MMP_RS06970 are separated by 6 nucleotidesMMP_RS06970 and MMP_RS06975 are separated by 170 nucleotidesMMP_RS06975 and MMP_RS06980 are separated by 90 nucleotides MMP_RS06965: MMP_RS06965 - TIGR04014 family B12-binding domain/radical SAM domain-containing protein, at 1,329,745 to 1,331,058 _RS06965 MMP_RS06970: MMP_RS06970 - ribosomal protein S18-alanine N-acetyltransferase, at 1,331,065 to 1,331,550 _RS06970 MMP_RS06975: MMP_RS06975 - sulfide-dependent adenosine diphosphate thiazole synthase, at 1,331,721 to 1,332,509 _RS06975 MMP_RS06980: MMP_RS06980 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 1,332,600 to 1,333,574 _RS06980 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1331.008 kb on - strandat 1331.008 kb on - strandat 1331.043 kb on + strandat 1331.063 kb on + strandat 1331.129 kb on + strand, within MMP_RS06970at 1331.151 kb on + strand, within MMP_RS06970at 1331.154 kb on + strand, within MMP_RS06970at 1331.154 kb on + strand, within MMP_RS06970at 1331.157 kb on - strand, within MMP_RS06970at 1331.157 kb on - strand, within MMP_RS06970at 1331.159 kb on - strand, within MMP_RS06970at 1331.286 kb on - strand, within MMP_RS06970at 1331.323 kb on - strand, within MMP_RS06970at 1331.347 kb on + strand, within MMP_RS06970at 1331.442 kb on + strand, within MMP_RS06970at 1331.442 kb on + strand, within MMP_RS06970at 1331.443 kb on - strand, within MMP_RS06970at 1331.444 kb on + strand, within MMP_RS06970at 1331.542 kb on - strandat 1331.551 kb on - strandat 1331.551 kb on - strandat 1331.553 kb on - strandat 1331.553 kb on - strandat 1331.554 kb on + strandat 1331.554 kb on + strandat 1331.554 kb on + strandat 1331.593 kb on + strandat 1331.598 kb on + strandat 1331.600 kb on + strandat 1331.666 kb on - strandat 1331.708 kb on + strandat 1331.776 kb on - strandat 1331.876 kb on - strand, within MMP_RS06975at 1332.005 kb on + strand, within MMP_RS06975at 1332.005 kb on + strand, within MMP_RS06975at 1332.545 kb on + strandat 1332.613 kb on - strandat 1332.613 kb on - strandat 1332.725 kb on - strand, within MMP_RS06980at 1332.726 kb on + strand, within MMP_RS06980at 1332.761 kb on + strand, within MMP_RS06980at 1332.873 kb on - strand, within MMP_RS06980at 1332.874 kb on + strand, within MMP_RS06980at 1332.916 kb on + strand, within MMP_RS06980at 1332.919 kb on + strand, within MMP_RS06980at 1332.920 kb on - strand, within MMP_RS06980at 1332.934 kb on + strand, within MMP_RS06980at 1332.947 kb on - strand, within MMP_RS06980at 1332.947 kb on - strand, within MMP_RS06980at 1333.237 kb on + strand, within MMP_RS06980at 1333.362 kb on - strand, within MMP_RS06980at 1333.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control
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1,331,008 - +0.1
1,331,008 - -0.6
1,331,043 + +0.4
1,331,063 + -0.0
1,331,129 + MMP_RS06970 0.13 +1.1
1,331,151 + MMP_RS06970 0.18 +0.2
1,331,154 + MMP_RS06970 0.18 -0.6
1,331,154 + MMP_RS06970 0.18 +0.3
1,331,157 - MMP_RS06970 0.19 -0.3
1,331,157 - MMP_RS06970 0.19 -0.1
1,331,159 - MMP_RS06970 0.19 +1.1
1,331,286 - MMP_RS06970 0.45 +0.2
1,331,323 - MMP_RS06970 0.53 +0.1
1,331,347 + MMP_RS06970 0.58 -0.9
1,331,442 + MMP_RS06970 0.78 -0.4
1,331,442 + MMP_RS06970 0.78 -0.0
1,331,443 - MMP_RS06970 0.78 -0.7
1,331,444 + MMP_RS06970 0.78 +0.6
1,331,542 - -0.2
1,331,551 - -0.7
1,331,551 - +1.0
1,331,553 - +0.0
1,331,553 - +0.2
1,331,554 + -0.2
1,331,554 + -0.9
1,331,554 + -1.4
1,331,593 + -1.6
1,331,598 + +0.7
1,331,600 + -0.2
1,331,666 - +0.4
1,331,708 + -0.1
1,331,776 - -2.7
1,331,876 - MMP_RS06975 0.20 -3.2
1,332,005 + MMP_RS06975 0.36 -5.4
1,332,005 + MMP_RS06975 0.36 -3.4
1,332,545 + -2.3
1,332,613 - -0.9
1,332,613 - -1.8
1,332,725 - MMP_RS06980 0.13 +0.1
1,332,726 + MMP_RS06980 0.13 -4.2
1,332,761 + MMP_RS06980 0.17 -1.0
1,332,873 - MMP_RS06980 0.28 -1.1
1,332,874 + MMP_RS06980 0.28 +0.5
1,332,916 + MMP_RS06980 0.32 +1.5
1,332,919 + MMP_RS06980 0.33 -0.3
1,332,920 - MMP_RS06980 0.33 +0.3
1,332,934 + MMP_RS06980 0.34 -0.8
1,332,947 - MMP_RS06980 0.36 -0.6
1,332,947 - MMP_RS06980 0.36 +0.0
1,333,237 + MMP_RS06980 0.65 -4.3
1,333,362 - MMP_RS06980 0.78 -0.8
1,333,506 + +0.3

Or see this region's nucleotide sequence