Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04680 and MMP_RS04685 are separated by 66 nucleotides MMP_RS04685 and MMP_RS04690 are separated by 11 nucleotides MMP_RS04690 and MMP_RS09010 are separated by 87 nucleotides MMP_RS09010 and MMP_RS04695 are separated by 35 nucleotides
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
MMP_RS04685: MMP_RS04685 - DUF126 domain-containing protein, at 897,383 to 897,775
_RS04685
MMP_RS04690: MMP_RS04690 - class III signal peptide-containing protein, at 897,787 to 898,014
_RS04690
MMP_RS09010: MMP_RS09010 - hypothetical protein, at 898,102 to 898,260
_RS09010
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
Position (kb) 898
899 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 897.237 kb on - strand at 897.265 kb on + strand at 897.270 kb on + strand at 897.271 kb on - strand at 897.271 kb on - strand at 897.272 kb on + strand at 897.316 kb on - strand at 897.360 kb on - strand at 897.364 kb on + strand at 897.426 kb on + strand, within MMP_RS04685 at 897.426 kb on + strand, within MMP_RS04685 at 897.429 kb on + strand, within MMP_RS04685 at 897.432 kb on + strand, within MMP_RS04685 at 897.455 kb on - strand, within MMP_RS04685 at 897.577 kb on + strand, within MMP_RS04685 at 897.631 kb on - strand, within MMP_RS04685 at 897.897 kb on - strand, within MMP_RS04690 at 897.908 kb on - strand, within MMP_RS04690 at 897.914 kb on - strand, within MMP_RS04690 at 897.953 kb on + strand, within MMP_RS04690 at 898.001 kb on - strand at 898.001 kb on - strand at 898.043 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.050 kb on + strand at 898.050 kb on + strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.054 kb on + strand at 898.069 kb on - strand at 898.070 kb on + strand at 898.075 kb on - strand at 898.075 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.080 kb on + strand at 898.080 kb on + strand at 898.082 kb on - strand at 898.098 kb on - strand at 898.099 kb on + strand at 898.099 kb on + strand at 898.129 kb on - strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.165 kb on + strand, within MMP_RS09010 at 898.237 kb on - strand, within MMP_RS09010 at 898.679 kb on - strand, within MMP_RS04695 at 898.998 kb on - strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 899.028 kb on - strand, within MMP_RS04695 at 899.029 kb on + strand, within MMP_RS04695 at 899.066 kb on + strand, within MMP_RS04695 at 899.067 kb on - strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.085 kb on + strand, within MMP_RS04695 at 899.236 kb on + strand at 899.245 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 897,237 - -2.6 897,265 + +0.9 897,270 + -0.4 897,271 - -2.9 897,271 - -3.1 897,272 + -1.3 897,316 - -2.6 897,360 - -1.9 897,364 + -1.6 897,426 + MMP_RS04685 0.11 -0.0 897,426 + MMP_RS04685 0.11 -0.2 897,429 + MMP_RS04685 0.12 -0.8 897,432 + MMP_RS04685 0.12 -0.9 897,455 - MMP_RS04685 0.18 -3.3 897,577 + MMP_RS04685 0.49 -0.2 897,631 - MMP_RS04685 0.63 +0.0 897,897 - MMP_RS04690 0.48 +1.0 897,908 - MMP_RS04690 0.53 +0.6 897,914 - MMP_RS04690 0.56 +1.2 897,953 + MMP_RS04690 0.73 -1.3 898,001 - +1.6 898,001 - -0.1 898,043 - -0.3 898,049 - +1.6 898,049 - +0.7 898,049 - -1.5 898,050 + -0.8 898,050 + +0.3 898,051 - +0.6 898,051 - +2.1 898,051 - -0.9 898,054 + +1.6 898,069 - -0.0 898,070 + +2.1 898,075 - +2.5 898,075 - -1.3 898,079 - -1.8 898,079 - +0.4 898,079 - +0.1 898,080 + -0.1 898,080 + -4.1 898,082 - +0.4 898,098 - -0.5 898,099 + -0.0 898,099 + +1.7 898,129 - MMP_RS09010 0.17 +0.6 898,130 + MMP_RS09010 0.18 +1.3 898,130 + MMP_RS09010 0.18 -0.0 898,130 + MMP_RS09010 0.18 +0.3 898,139 - MMP_RS09010 0.23 -1.6 898,139 - MMP_RS09010 0.23 +0.4 898,140 + MMP_RS09010 0.24 -0.3 898,140 + MMP_RS09010 0.24 +1.1 898,165 + MMP_RS09010 0.40 -1.8 898,237 - MMP_RS09010 0.85 -0.3 898,679 - MMP_RS04695 0.38 +0.2 898,998 - MMP_RS04695 0.70 +1.6 898,999 + MMP_RS04695 0.70 +1.3 898,999 + MMP_RS04695 0.70 +1.8 899,028 - MMP_RS04695 0.73 +1.8 899,029 + MMP_RS04695 0.73 +2.9 899,066 + MMP_RS04695 0.76 +0.4 899,067 - MMP_RS04695 0.76 -0.2 899,068 + MMP_RS04695 0.77 +2.1 899,068 + MMP_RS04695 0.77 -0.3 899,085 + MMP_RS04695 0.78 +1.6 899,236 + +2.7 899,245 + +1.9
Or see this region's nucleotide sequence