Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04895 and MMP_RS04900 are separated by 88 nucleotides MMP_RS04900 and MMP_RS04905 are separated by 44 nucleotides
MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311
_RS04895
MMP_RS04900: MMP_RS04900 - hypothetical protein, at 931,400 to 933,241
_RS04900
MMP_RS04905: MMP_RS04905 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 933,286 to 934,695
_RS04905
Position (kb) 931
932
933
934 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 930.466 kb on - strand, within MMP_RS04895 at 930.532 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.586 kb on + strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.617 kb on + strand, within MMP_RS04895 at 930.648 kb on - strand, within MMP_RS04895 at 930.694 kb on - strand, within MMP_RS04895 at 930.705 kb on - strand, within MMP_RS04895 at 930.724 kb on - strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.743 kb on - strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.766 kb on + strand, within MMP_RS04895 at 930.788 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.882 kb on - strand, within MMP_RS04895 at 930.921 kb on - strand, within MMP_RS04895 at 930.970 kb on - strand, within MMP_RS04895 at 931.000 kb on - strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.002 kb on - strand, within MMP_RS04895 at 931.004 kb on - strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.019 kb on + strand, within MMP_RS04895 at 931.057 kb on - strand, within MMP_RS04895 at 931.084 kb on - strand, within MMP_RS04895 at 931.099 kb on - strand, within MMP_RS04895 at 931.125 kb on - strand, within MMP_RS04895 at 931.133 kb on + strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.218 kb on - strand at 931.218 kb on - strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.221 kb on - strand at 931.221 kb on - strand at 931.222 kb on + strand at 931.242 kb on - strand at 931.249 kb on + strand at 931.249 kb on + strand at 931.285 kb on - strand at 931.293 kb on - strand at 931.294 kb on + strand at 931.333 kb on - strand at 931.343 kb on - strand at 931.344 kb on + strand at 931.344 kb on + strand at 931.345 kb on - strand at 931.346 kb on + strand at 931.351 kb on - strand at 931.352 kb on + strand at 931.362 kb on - strand at 931.362 kb on - strand at 931.363 kb on + strand at 931.363 kb on + strand at 931.368 kb on - strand at 931.368 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.373 kb on + strand at 931.373 kb on + strand at 931.397 kb on - strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.399 kb on - strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.478 kb on + strand at 931.478 kb on + strand at 931.594 kb on - strand, within MMP_RS04900 at 931.648 kb on - strand, within MMP_RS04900 at 931.649 kb on + strand, within MMP_RS04900 at 931.649 kb on + strand, within MMP_RS04900 at 931.717 kb on + strand, within MMP_RS04900 at 931.963 kb on + strand, within MMP_RS04900 at 931.963 kb on + strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.061 kb on + strand, within MMP_RS04900 at 932.061 kb on + strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.096 kb on + strand, within MMP_RS04900 at 932.096 kb on + strand, within MMP_RS04900 at 932.099 kb on - strand, within MMP_RS04900 at 932.100 kb on + strand, within MMP_RS04900 at 932.137 kb on - strand, within MMP_RS04900 at 932.150 kb on + strand, within MMP_RS04900 at 932.237 kb on - strand, within MMP_RS04900 at 932.276 kb on + strand, within MMP_RS04900 at 932.287 kb on - strand, within MMP_RS04900 at 932.287 kb on - strand, within MMP_RS04900 at 932.343 kb on - strand, within MMP_RS04900 at 932.396 kb on - strand, within MMP_RS04900 at 932.397 kb on + strand, within MMP_RS04900 at 932.397 kb on + strand, within MMP_RS04900 at 932.420 kb on + strand, within MMP_RS04900 at 932.503 kb on + strand, within MMP_RS04900 at 932.535 kb on - strand, within MMP_RS04900 at 932.536 kb on + strand, within MMP_RS04900 at 932.536 kb on + strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.572 kb on + strand, within MMP_RS04900 at 932.590 kb on - strand, within MMP_RS04900 at 932.591 kb on + strand, within MMP_RS04900 at 932.591 kb on + strand, within MMP_RS04900 at 932.624 kb on + strand, within MMP_RS04900 at 932.659 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.672 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.790 kb on + strand, within MMP_RS04900 at 932.821 kb on + strand, within MMP_RS04900 at 932.846 kb on - strand, within MMP_RS04900 at 932.918 kb on + strand, within MMP_RS04900 at 932.937 kb on - strand, within MMP_RS04900 at 932.937 kb on - strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.941 kb on - strand, within MMP_RS04900 at 932.941 kb on - strand, within MMP_RS04900 at 932.942 kb on + strand, within MMP_RS04900 at 932.942 kb on + strand, within MMP_RS04900 at 932.951 kb on + strand, within MMP_RS04900 at 932.971 kb on + strand, within MMP_RS04900 at 932.985 kb on - strand, within MMP_RS04900 at 933.004 kb on - strand, within MMP_RS04900 at 933.010 kb on + strand, within MMP_RS04900 at 933.023 kb on + strand, within MMP_RS04900 at 933.102 kb on - strand at 933.176 kb on - strand at 933.177 kb on + strand at 933.179 kb on + strand at 933.179 kb on + strand at 933.180 kb on - strand at 933.181 kb on + strand at 933.239 kb on - strand at 933.249 kb on + strand at 933.280 kb on - strand at 933.528 kb on - strand at 933.779 kb on + strand at 933.923 kb on - strand at 934.138 kb on - strand at 934.138 kb on - strand at 934.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 930,466 - MMP_RS04895 0.16 +0.5 930,532 - MMP_RS04895 0.23 -0.5 930,566 - MMP_RS04895 0.26 -0.3 930,566 - MMP_RS04895 0.26 +0.1 930,567 + MMP_RS04895 0.26 +1.3 930,567 + MMP_RS04895 0.26 +0.3 930,585 - MMP_RS04895 0.28 +1.0 930,585 - MMP_RS04895 0.28 -0.9 930,585 - MMP_RS04895 0.28 +0.8 930,586 + MMP_RS04895 0.28 +0.2 930,587 - MMP_RS04895 0.28 -2.1 930,587 - MMP_RS04895 0.28 +0.8 930,587 - MMP_RS04895 0.28 -1.9 930,587 - MMP_RS04895 0.28 +0.8 930,587 - MMP_RS04895 0.28 -2.1 930,588 + MMP_RS04895 0.28 -0.1 930,588 + MMP_RS04895 0.28 +0.8 930,588 + MMP_RS04895 0.28 -0.6 930,588 + MMP_RS04895 0.28 -1.1 930,588 + MMP_RS04895 0.28 +0.4 930,588 + MMP_RS04895 0.28 -1.2 930,590 + MMP_RS04895 0.29 -0.4 930,590 + MMP_RS04895 0.29 +0.7 930,590 + MMP_RS04895 0.29 -1.3 930,617 + MMP_RS04895 0.31 -1.7 930,648 - MMP_RS04895 0.34 +0.2 930,694 - MMP_RS04895 0.39 +1.1 930,705 - MMP_RS04895 0.40 -1.9 930,724 - MMP_RS04895 0.42 -2.5 930,725 + MMP_RS04895 0.42 -2.1 930,725 + MMP_RS04895 0.42 +0.0 930,743 - MMP_RS04895 0.44 +1.1 930,744 + MMP_RS04895 0.44 +1.1 930,744 + MMP_RS04895 0.44 -0.0 930,766 + MMP_RS04895 0.46 -0.9 930,788 - MMP_RS04895 0.48 +0.7 930,848 - MMP_RS04895 0.54 -0.7 930,848 - MMP_RS04895 0.54 -1.4 930,851 - MMP_RS04895 0.54 -3.2 930,851 - MMP_RS04895 0.54 +0.9 930,852 + MMP_RS04895 0.55 +0.7 930,852 + MMP_RS04895 0.55 +0.8 930,882 - MMP_RS04895 0.57 +0.6 930,921 - MMP_RS04895 0.61 -5.2 930,970 - MMP_RS04895 0.66 +1.6 931,000 - MMP_RS04895 0.69 -0.3 931,001 + MMP_RS04895 0.69 +0.9 931,001 + MMP_RS04895 0.69 -1.3 931,001 + MMP_RS04895 0.69 -1.2 931,001 + MMP_RS04895 0.69 -0.2 931,001 + MMP_RS04895 0.69 +2.3 931,002 - MMP_RS04895 0.69 -0.1 931,004 - MMP_RS04895 0.70 +0.7 931,005 + MMP_RS04895 0.70 +0.2 931,005 + MMP_RS04895 0.70 -0.6 931,019 + MMP_RS04895 0.71 +0.1 931,057 - MMP_RS04895 0.75 -1.6 931,084 - MMP_RS04895 0.77 +0.7 931,099 - MMP_RS04895 0.79 +0.1 931,125 - MMP_RS04895 0.82 -0.3 931,133 + MMP_RS04895 0.82 -0.3 931,191 - MMP_RS04895 0.88 +0.1 931,191 - MMP_RS04895 0.88 +1.7 931,191 - MMP_RS04895 0.88 +0.7 931,191 - MMP_RS04895 0.88 -2.2 931,191 - MMP_RS04895 0.88 -0.1 931,192 + MMP_RS04895 0.88 +0.3 931,192 + MMP_RS04895 0.88 +0.5 931,192 + MMP_RS04895 0.88 +1.0 931,193 - MMP_RS04895 0.88 -0.0 931,193 - MMP_RS04895 0.88 +0.5 931,193 - MMP_RS04895 0.88 +0.2 931,194 + MMP_RS04895 0.88 +0.9 931,194 + MMP_RS04895 0.88 -2.6 931,194 + MMP_RS04895 0.88 +0.5 931,194 + MMP_RS04895 0.88 +1.4 931,218 - -1.0 931,218 - +1.1 931,219 + +0.7 931,219 + +1.0 931,219 + -0.6 931,219 + -1.4 931,221 - +1.0 931,221 - -0.7 931,222 + -0.0 931,242 - -1.5 931,249 + +1.4 931,249 + +1.4 931,285 - +0.9 931,293 - +0.4 931,294 + +0.8 931,333 - -0.1 931,343 - +1.0 931,344 + -0.1 931,344 + -0.4 931,345 - -0.0 931,346 + -0.1 931,351 - +1.0 931,352 + -3.9 931,362 - -0.5 931,362 - +0.6 931,363 + -0.5 931,363 + -0.1 931,368 - +1.2 931,368 - -0.3 931,372 - +0.6 931,372 - -0.5 931,373 + -0.5 931,373 + +0.4 931,397 - -0.4 931,398 + -0.3 931,398 + -0.6 931,398 + -0.6 931,398 + -1.3 931,398 + -1.1 931,399 - -0.9 931,400 + -1.1 931,400 + -2.4 931,400 + -1.0 931,400 + +0.4 931,400 + +0.3 931,478 + +1.2 931,478 + -1.6 931,594 - MMP_RS04900 0.11 -0.4 931,648 - MMP_RS04900 0.13 -0.6 931,649 + MMP_RS04900 0.14 +1.5 931,649 + MMP_RS04900 0.14 -0.6 931,717 + MMP_RS04900 0.17 -1.5 931,963 + MMP_RS04900 0.31 -0.5 931,963 + MMP_RS04900 0.31 -0.5 932,048 - MMP_RS04900 0.35 +0.1 932,048 - MMP_RS04900 0.35 +0.0 932,048 - MMP_RS04900 0.35 +0.1 932,049 + MMP_RS04900 0.35 -0.1 932,049 + MMP_RS04900 0.35 -0.6 932,049 + MMP_RS04900 0.35 -0.9 932,061 + MMP_RS04900 0.36 -0.6 932,061 + MMP_RS04900 0.36 -0.3 932,062 - MMP_RS04900 0.36 +0.4 932,062 - MMP_RS04900 0.36 -1.1 932,062 - MMP_RS04900 0.36 -2.6 932,062 - MMP_RS04900 0.36 -0.6 932,062 - MMP_RS04900 0.36 -0.0 932,063 + MMP_RS04900 0.36 -0.7 932,063 + MMP_RS04900 0.36 -3.7 932,063 + MMP_RS04900 0.36 -1.5 932,063 + MMP_RS04900 0.36 -1.7 932,083 - MMP_RS04900 0.37 -1.8 932,083 - MMP_RS04900 0.37 -1.4 932,083 - MMP_RS04900 0.37 -0.2 932,095 - MMP_RS04900 0.38 +0.1 932,095 - MMP_RS04900 0.38 +0.3 932,095 - MMP_RS04900 0.38 +0.4 932,095 - MMP_RS04900 0.38 -1.2 932,095 - MMP_RS04900 0.38 +0.9 932,096 + MMP_RS04900 0.38 -0.4 932,096 + MMP_RS04900 0.38 +0.9 932,099 - MMP_RS04900 0.38 +0.8 932,100 + MMP_RS04900 0.38 -0.4 932,137 - MMP_RS04900 0.40 -0.6 932,150 + MMP_RS04900 0.41 +0.0 932,237 - MMP_RS04900 0.45 -0.5 932,276 + MMP_RS04900 0.48 +0.6 932,287 - MMP_RS04900 0.48 +0.2 932,287 - MMP_RS04900 0.48 -1.3 932,343 - MMP_RS04900 0.51 +0.1 932,396 - MMP_RS04900 0.54 -0.9 932,397 + MMP_RS04900 0.54 -0.1 932,397 + MMP_RS04900 0.54 -0.3 932,420 + MMP_RS04900 0.55 -0.5 932,503 + MMP_RS04900 0.60 -1.2 932,535 - MMP_RS04900 0.62 -1.9 932,536 + MMP_RS04900 0.62 -0.2 932,536 + MMP_RS04900 0.62 -0.8 932,571 - MMP_RS04900 0.64 -1.8 932,571 - MMP_RS04900 0.64 -2.3 932,571 - MMP_RS04900 0.64 -1.1 932,571 - MMP_RS04900 0.64 -0.4 932,572 + MMP_RS04900 0.64 -0.3 932,590 - MMP_RS04900 0.65 -0.9 932,591 + MMP_RS04900 0.65 -1.9 932,591 + MMP_RS04900 0.65 -1.3 932,624 + MMP_RS04900 0.66 -0.8 932,659 - MMP_RS04900 0.68 -0.4 932,671 - MMP_RS04900 0.69 +0.9 932,671 - MMP_RS04900 0.69 -0.9 932,671 - MMP_RS04900 0.69 -0.2 932,672 + MMP_RS04900 0.69 +0.4 932,717 + MMP_RS04900 0.71 -2.6 932,717 + MMP_RS04900 0.71 -2.1 932,717 + MMP_RS04900 0.71 -1.9 932,790 + MMP_RS04900 0.75 -0.8 932,821 + MMP_RS04900 0.77 -1.1 932,846 - MMP_RS04900 0.79 +0.5 932,918 + MMP_RS04900 0.82 +0.1 932,937 - MMP_RS04900 0.83 +0.4 932,937 - MMP_RS04900 0.83 +0.1 932,938 + MMP_RS04900 0.83 -0.0 932,938 + MMP_RS04900 0.83 -0.4 932,938 + MMP_RS04900 0.83 +0.7 932,941 - MMP_RS04900 0.84 +1.8 932,941 - MMP_RS04900 0.84 -0.2 932,942 + MMP_RS04900 0.84 +0.2 932,942 + MMP_RS04900 0.84 -0.2 932,951 + MMP_RS04900 0.84 -0.7 932,971 + MMP_RS04900 0.85 -1.5 932,985 - MMP_RS04900 0.86 -0.4 933,004 - MMP_RS04900 0.87 -1.6 933,010 + MMP_RS04900 0.87 -1.9 933,023 + MMP_RS04900 0.88 -3.7 933,102 - +0.3 933,176 - +0.5 933,177 + -0.6 933,179 + -2.7 933,179 + -0.5 933,180 - -0.3 933,181 + -2.4 933,239 - -0.8 933,249 + -0.7 933,280 - -0.7 933,528 - -1.9 933,779 + -2.1 933,923 - -0.2 934,138 - +0.4 934,138 - -1.9 934,174 - -2.1
Or see this region's nucleotide sequence