Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04530 and MMP_RS04535 are separated by 120 nucleotides MMP_RS04535 and MMP_RS04540 are separated by 89 nucleotides
MMP_RS04530: MMP_RS04530 - ABC transporter permease, at 862,626 to 863,819
_RS04530
MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854
_RS04535
MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647
_RS04540
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 862.976 kb on + strand, within MMP_RS04530 at 863.006 kb on + strand, within MMP_RS04530 at 863.263 kb on + strand, within MMP_RS04530 at 863.263 kb on + strand, within MMP_RS04530 at 863.267 kb on - strand, within MMP_RS04530 at 863.309 kb on + strand, within MMP_RS04530 at 863.510 kb on - strand, within MMP_RS04530 at 863.728 kb on - strand at 863.740 kb on - strand at 863.740 kb on - strand at 863.740 kb on - strand at 863.752 kb on - strand at 863.753 kb on + strand at 863.753 kb on + strand at 863.760 kb on - strand at 863.801 kb on - strand at 863.802 kb on + strand at 863.836 kb on + strand at 863.847 kb on + strand at 863.849 kb on - strand at 863.874 kb on + strand at 863.915 kb on + strand at 863.920 kb on + strand at 863.924 kb on + strand at 863.969 kb on - strand at 863.970 kb on + strand at 863.994 kb on - strand at 863.995 kb on + strand at 864.010 kb on - strand at 864.011 kb on + strand at 864.047 kb on - strand at 864.048 kb on + strand at 864.075 kb on + strand at 864.245 kb on + strand at 864.290 kb on + strand at 864.424 kb on - strand at 864.425 kb on + strand at 864.700 kb on - strand at 864.729 kb on + strand at 864.763 kb on - strand at 864.766 kb on - strand at 864.767 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.828 kb on + strand at 864.845 kb on - strand at 864.849 kb on - strand at 864.849 kb on - strand at 864.897 kb on - strand at 864.901 kb on - strand at 864.974 kb on - strand at 864.974 kb on - strand at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.348 kb on + strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.468 kb on - strand, within MMP_RS04540 at 865.469 kb on + strand, within MMP_RS04540 at 865.535 kb on - strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.651 kb on - strand, within MMP_RS04540 at 865.657 kb on + strand, within MMP_RS04540 at 865.719 kb on - strand, within MMP_RS04540 at 865.720 kb on + strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.814 kb on - strand, within MMP_RS04540 at 865.815 kb on + strand, within MMP_RS04540 at 865.833 kb on - strand, within MMP_RS04540 at 865.834 kb on + strand, within MMP_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 862,976 + MMP_RS04530 0.29 -0.3 863,006 + MMP_RS04530 0.32 +0.7 863,263 + MMP_RS04530 0.53 -0.1 863,263 + MMP_RS04530 0.53 +0.9 863,267 - MMP_RS04530 0.54 -0.1 863,309 + MMP_RS04530 0.57 +2.5 863,510 - MMP_RS04530 0.74 -0.3 863,728 - -0.9 863,740 - +0.8 863,740 - +0.2 863,740 - -0.4 863,752 - +0.4 863,753 + -0.8 863,753 + +0.4 863,760 - +1.0 863,801 - -1.0 863,802 + +0.3 863,836 + -0.5 863,847 + +0.2 863,849 - +1.5 863,874 + -0.2 863,915 + +0.9 863,920 + -1.1 863,924 + +4.2 863,969 - -3.6 863,970 + -1.1 863,994 - +0.5 863,995 + -0.3 864,010 - -0.2 864,011 + -1.2 864,047 - -0.1 864,048 + -3.5 864,075 + -1.3 864,245 + -0.9 864,290 + -1.4 864,424 - -1.9 864,425 + -2.9 864,700 - -2.4 864,729 + -0.2 864,763 - -3.6 864,766 - +0.6 864,767 + +0.1 864,771 + -3.6 864,771 + +0.5 864,771 + -1.4 864,828 + +0.1 864,845 - +1.7 864,849 - +1.9 864,849 - +0.7 864,897 - -0.8 864,901 - -2.2 864,974 - +0.7 864,974 - +0.5 865,115 - MMP_RS04540 0.10 -0.3 865,115 - MMP_RS04540 0.10 +0.4 865,115 - MMP_RS04540 0.10 -0.8 865,348 + MMP_RS04540 0.24 +1.5 865,380 - MMP_RS04540 0.26 +1.1 865,380 - MMP_RS04540 0.26 +0.3 865,468 - MMP_RS04540 0.31 +0.3 865,469 + MMP_RS04540 0.31 +1.7 865,535 - MMP_RS04540 0.35 +1.3 865,536 + MMP_RS04540 0.35 -1.2 865,536 + MMP_RS04540 0.35 +0.5 865,651 - MMP_RS04540 0.41 +0.2 865,657 + MMP_RS04540 0.42 -3.3 865,719 - MMP_RS04540 0.45 +0.1 865,720 + MMP_RS04540 0.46 +0.2 865,726 - MMP_RS04540 0.46 +2.6 865,726 - MMP_RS04540 0.46 -2.9 865,814 - MMP_RS04540 0.51 -1.2 865,815 + MMP_RS04540 0.51 +0.8 865,833 - MMP_RS04540 0.52 -1.1 865,834 + MMP_RS04540 0.52 +0.9
Or see this region's nucleotide sequence