Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04460 and MMP_RS04465 are separated by 22 nucleotides MMP_RS04465 and MMP_RS04470 are separated by 17 nucleotides
MMP_RS04460: MMP_RS04460 - nitrogenase molybdenum-iron protein subunit beta, at 847,128 to 848,516
_RS04460
MMP_RS04465: MMP_RS04465 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 848,539 to 849,981
_RS04465
MMP_RS04470: MMP_RS04470 - nitrogenase, at 849,999 to 851,375
_RS04470
Position (kb) 848
849
850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 847.550 kb on - strand, within MMP_RS04460 at 847.551 kb on + strand, within MMP_RS04460 at 847.676 kb on + strand, within MMP_RS04460 at 847.706 kb on - strand, within MMP_RS04460 at 847.706 kb on - strand, within MMP_RS04460 at 847.733 kb on - strand, within MMP_RS04460 at 847.733 kb on - strand, within MMP_RS04460 at 847.738 kb on - strand, within MMP_RS04460 at 847.739 kb on + strand, within MMP_RS04460 at 847.739 kb on + strand, within MMP_RS04460 at 847.743 kb on + strand, within MMP_RS04460 at 847.748 kb on - strand, within MMP_RS04460 at 847.804 kb on + strand, within MMP_RS04460 at 847.806 kb on - strand, within MMP_RS04460 at 847.862 kb on - strand, within MMP_RS04460 at 847.877 kb on - strand, within MMP_RS04460 at 847.878 kb on + strand, within MMP_RS04460 at 847.878 kb on + strand, within MMP_RS04460 at 847.878 kb on + strand, within MMP_RS04460 at 847.878 kb on + strand, within MMP_RS04460 at 847.881 kb on - strand, within MMP_RS04460 at 847.882 kb on + strand, within MMP_RS04460 at 847.917 kb on - strand, within MMP_RS04460 at 848.039 kb on - strand, within MMP_RS04460 at 848.040 kb on + strand, within MMP_RS04460 at 848.076 kb on - strand, within MMP_RS04460 at 848.076 kb on - strand, within MMP_RS04460 at 848.080 kb on - strand, within MMP_RS04460 at 848.081 kb on + strand, within MMP_RS04460 at 848.081 kb on + strand, within MMP_RS04460 at 848.103 kb on - strand, within MMP_RS04460 at 848.119 kb on - strand, within MMP_RS04460 at 848.120 kb on + strand, within MMP_RS04460 at 848.143 kb on - strand, within MMP_RS04460 at 848.174 kb on + strand, within MMP_RS04460 at 848.196 kb on - strand, within MMP_RS04460 at 848.269 kb on - strand, within MMP_RS04460 at 848.278 kb on - strand, within MMP_RS04460 at 848.278 kb on - strand, within MMP_RS04460 at 848.278 kb on - strand, within MMP_RS04460 at 848.278 kb on - strand, within MMP_RS04460 at 848.481 kb on - strand at 848.514 kb on - strand at 848.515 kb on + strand at 848.525 kb on - strand at 848.535 kb on - strand at 848.536 kb on + strand at 848.538 kb on - strand at 848.556 kb on - strand at 848.606 kb on - strand at 848.764 kb on - strand, within MMP_RS04465 at 848.787 kb on + strand, within MMP_RS04465 at 848.808 kb on + strand, within MMP_RS04465 at 848.865 kb on - strand, within MMP_RS04465 at 848.865 kb on - strand, within MMP_RS04465 at 848.931 kb on + strand, within MMP_RS04465 at 848.954 kb on + strand, within MMP_RS04465 at 848.976 kb on - strand, within MMP_RS04465 at 849.013 kb on + strand, within MMP_RS04465 at 849.270 kb on + strand, within MMP_RS04465 at 849.361 kb on + strand, within MMP_RS04465 at 849.363 kb on + strand, within MMP_RS04465 at 849.388 kb on - strand, within MMP_RS04465 at 849.463 kb on + strand, within MMP_RS04465 at 849.555 kb on - strand, within MMP_RS04465 at 849.594 kb on - strand, within MMP_RS04465 at 849.595 kb on + strand, within MMP_RS04465 at 849.609 kb on + strand, within MMP_RS04465 at 849.610 kb on - strand, within MMP_RS04465 at 849.610 kb on - strand, within MMP_RS04465 at 849.642 kb on + strand, within MMP_RS04465 at 849.673 kb on + strand, within MMP_RS04465 at 849.746 kb on - strand, within MMP_RS04465 at 849.746 kb on - strand, within MMP_RS04465 at 849.747 kb on + strand, within MMP_RS04465 at 849.747 kb on + strand, within MMP_RS04465 at 849.779 kb on - strand, within MMP_RS04465 at 849.779 kb on - strand, within MMP_RS04465 at 849.780 kb on + strand, within MMP_RS04465 at 849.810 kb on + strand, within MMP_RS04465 at 849.810 kb on + strand, within MMP_RS04465 at 849.810 kb on + strand, within MMP_RS04465 at 849.812 kb on - strand, within MMP_RS04465 at 849.812 kb on - strand, within MMP_RS04465 at 849.935 kb on - strand at 849.935 kb on - strand at 849.935 kb on - strand at 849.936 kb on + strand at 849.996 kb on + strand at 849.999 kb on + strand at 850.061 kb on + strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.204 kb on - strand, within MMP_RS04470 at 850.207 kb on - strand, within MMP_RS04470 at 850.207 kb on - strand, within MMP_RS04470 at 850.270 kb on - strand, within MMP_RS04470 at 850.283 kb on - strand, within MMP_RS04470 at 850.284 kb on + strand, within MMP_RS04470 at 850.284 kb on + strand, within MMP_RS04470 at 850.360 kb on - strand, within MMP_RS04470 at 850.394 kb on - strand, within MMP_RS04470 at 850.395 kb on + strand, within MMP_RS04470 at 850.395 kb on + strand, within MMP_RS04470 at 850.395 kb on + strand, within MMP_RS04470 at 850.400 kb on - strand, within MMP_RS04470 at 850.401 kb on + strand, within MMP_RS04470 at 850.408 kb on - strand, within MMP_RS04470 at 850.408 kb on - strand, within MMP_RS04470 at 850.408 kb on - strand, within MMP_RS04470 at 850.409 kb on + strand, within MMP_RS04470 at 850.409 kb on + strand, within MMP_RS04470 at 850.480 kb on - strand, within MMP_RS04470 at 850.481 kb on + strand, within MMP_RS04470 at 850.553 kb on + strand, within MMP_RS04470 at 850.562 kb on + strand, within MMP_RS04470 at 850.586 kb on - strand, within MMP_RS04470 at 850.587 kb on + strand, within MMP_RS04470 at 850.587 kb on + strand, within MMP_RS04470 at 850.637 kb on - strand, within MMP_RS04470 at 850.805 kb on - strand, within MMP_RS04470 at 850.838 kb on + strand, within MMP_RS04470 at 850.841 kb on - strand, within MMP_RS04470 at 850.841 kb on - strand, within MMP_RS04470 at 850.934 kb on + strand, within MMP_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 847,550 - MMP_RS04460 0.30 -0.3 847,551 + MMP_RS04460 0.30 +0.7 847,676 + MMP_RS04460 0.39 +2.6 847,706 - MMP_RS04460 0.42 -0.2 847,706 - MMP_RS04460 0.42 +0.2 847,733 - MMP_RS04460 0.44 +1.2 847,733 - MMP_RS04460 0.44 +0.6 847,738 - MMP_RS04460 0.44 -1.6 847,739 + MMP_RS04460 0.44 -0.9 847,739 + MMP_RS04460 0.44 -0.8 847,743 + MMP_RS04460 0.44 +1.2 847,748 - MMP_RS04460 0.45 -0.5 847,804 + MMP_RS04460 0.49 +1.0 847,806 - MMP_RS04460 0.49 +1.2 847,862 - MMP_RS04460 0.53 +0.1 847,877 - MMP_RS04460 0.54 -0.6 847,878 + MMP_RS04460 0.54 +0.8 847,878 + MMP_RS04460 0.54 +0.5 847,878 + MMP_RS04460 0.54 +2.1 847,878 + MMP_RS04460 0.54 -1.2 847,881 - MMP_RS04460 0.54 -1.1 847,882 + MMP_RS04460 0.54 +1.0 847,917 - MMP_RS04460 0.57 -1.2 848,039 - MMP_RS04460 0.66 +0.1 848,040 + MMP_RS04460 0.66 +0.4 848,076 - MMP_RS04460 0.68 +1.8 848,076 - MMP_RS04460 0.68 -0.3 848,080 - MMP_RS04460 0.69 +0.4 848,081 + MMP_RS04460 0.69 -0.8 848,081 + MMP_RS04460 0.69 +0.2 848,103 - MMP_RS04460 0.70 +2.2 848,119 - MMP_RS04460 0.71 +0.5 848,120 + MMP_RS04460 0.71 -0.5 848,143 - MMP_RS04460 0.73 +0.6 848,174 + MMP_RS04460 0.75 -0.6 848,196 - MMP_RS04460 0.77 +1.1 848,269 - MMP_RS04460 0.82 +1.0 848,278 - MMP_RS04460 0.83 -3.5 848,278 - MMP_RS04460 0.83 +0.1 848,278 - MMP_RS04460 0.83 -1.1 848,278 - MMP_RS04460 0.83 +0.9 848,481 - +1.3 848,514 - +0.4 848,515 + +1.3 848,525 - +0.7 848,535 - -0.6 848,536 + -1.0 848,538 - -0.8 848,556 - +0.4 848,606 - +0.6 848,764 - MMP_RS04465 0.16 +1.8 848,787 + MMP_RS04465 0.17 +0.8 848,808 + MMP_RS04465 0.19 -0.4 848,865 - MMP_RS04465 0.23 +0.4 848,865 - MMP_RS04465 0.23 +0.2 848,931 + MMP_RS04465 0.27 -0.6 848,954 + MMP_RS04465 0.29 -0.8 848,976 - MMP_RS04465 0.30 +0.7 849,013 + MMP_RS04465 0.33 -0.3 849,270 + MMP_RS04465 0.51 -3.0 849,361 + MMP_RS04465 0.57 -1.4 849,363 + MMP_RS04465 0.57 -0.1 849,388 - MMP_RS04465 0.59 -0.7 849,463 + MMP_RS04465 0.64 +0.6 849,555 - MMP_RS04465 0.70 -1.9 849,594 - MMP_RS04465 0.73 -1.0 849,595 + MMP_RS04465 0.73 -1.0 849,609 + MMP_RS04465 0.74 +1.6 849,610 - MMP_RS04465 0.74 -0.6 849,610 - MMP_RS04465 0.74 -0.3 849,642 + MMP_RS04465 0.76 +2.0 849,673 + MMP_RS04465 0.79 +2.2 849,746 - MMP_RS04465 0.84 +0.6 849,746 - MMP_RS04465 0.84 -0.9 849,747 + MMP_RS04465 0.84 -0.6 849,747 + MMP_RS04465 0.84 +1.3 849,779 - MMP_RS04465 0.86 -3.3 849,779 - MMP_RS04465 0.86 +0.4 849,780 + MMP_RS04465 0.86 -1.2 849,810 + MMP_RS04465 0.88 +1.4 849,810 + MMP_RS04465 0.88 +0.4 849,810 + MMP_RS04465 0.88 -1.1 849,812 - MMP_RS04465 0.88 +0.5 849,812 - MMP_RS04465 0.88 -0.6 849,935 - -1.1 849,935 - +0.8 849,935 - +1.7 849,936 + +1.7 849,996 + -4.6 849,999 + +0.6 850,061 + +1.3 850,126 + -0.7 850,126 + -0.3 850,204 - MMP_RS04470 0.15 +0.6 850,207 - MMP_RS04470 0.15 -0.9 850,207 - MMP_RS04470 0.15 -1.5 850,270 - MMP_RS04470 0.20 +0.0 850,283 - MMP_RS04470 0.21 +0.0 850,284 + MMP_RS04470 0.21 +0.6 850,284 + MMP_RS04470 0.21 +1.2 850,360 - MMP_RS04470 0.26 +1.5 850,394 - MMP_RS04470 0.29 -0.1 850,395 + MMP_RS04470 0.29 +0.2 850,395 + MMP_RS04470 0.29 +0.4 850,395 + MMP_RS04470 0.29 -0.5 850,400 - MMP_RS04470 0.29 -0.5 850,401 + MMP_RS04470 0.29 +0.4 850,408 - MMP_RS04470 0.30 +0.7 850,408 - MMP_RS04470 0.30 -1.3 850,408 - MMP_RS04470 0.30 +0.1 850,409 + MMP_RS04470 0.30 +2.2 850,409 + MMP_RS04470 0.30 -0.6 850,480 - MMP_RS04470 0.35 +1.2 850,481 + MMP_RS04470 0.35 +0.6 850,553 + MMP_RS04470 0.40 -0.1 850,562 + MMP_RS04470 0.41 +0.6 850,586 - MMP_RS04470 0.43 +0.7 850,587 + MMP_RS04470 0.43 -0.4 850,587 + MMP_RS04470 0.43 +0.3 850,637 - MMP_RS04470 0.46 -0.2 850,805 - MMP_RS04470 0.59 +0.9 850,838 + MMP_RS04470 0.61 -0.5 850,841 - MMP_RS04470 0.61 -1.2 850,841 - MMP_RS04470 0.61 -0.5 850,934 + MMP_RS04470 0.68 -0.8
Or see this region's nucleotide sequence