Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04215 and MMP_RS04220 are separated by 48 nucleotides MMP_RS04220 and MMP_RS04225 are separated by 86 nucleotides MMP_RS04225 and MMP_RS04230 are separated by 80 nucleotides
MMP_RS04215: MMP_RS04215 - nickel pincer cofactor biosynthesis protein LarB, at 801,580 to 802,365
_RS04215
MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022
_RS04220
MMP_RS04225: MMP_RS04225 - hypothetical protein, at 803,109 to 803,621
_RS04225
MMP_RS04230: MMP_RS04230 - hypothetical protein, at 803,702 to 805,855
_RS04230
Position (kb) 803
804 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 802.265 kb on - strand, within MMP_RS04215 at 802.407 kb on + strand at 802.443 kb on + strand at 802.445 kb on + strand at 802.469 kb on + strand at 802.474 kb on + strand at 802.529 kb on + strand, within MMP_RS04220 at 802.587 kb on - strand, within MMP_RS04220 at 802.628 kb on - strand, within MMP_RS04220 at 802.660 kb on - strand, within MMP_RS04220 at 802.661 kb on + strand, within MMP_RS04220 at 802.661 kb on + strand, within MMP_RS04220 at 802.661 kb on + strand, within MMP_RS04220 at 802.661 kb on + strand, within MMP_RS04220 at 802.680 kb on + strand, within MMP_RS04220 at 802.723 kb on - strand, within MMP_RS04220 at 802.748 kb on - strand, within MMP_RS04220 at 802.869 kb on - strand, within MMP_RS04220 at 802.879 kb on - strand, within MMP_RS04220 at 802.880 kb on + strand, within MMP_RS04220 at 802.883 kb on - strand, within MMP_RS04220 at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.972 kb on + strand at 802.972 kb on + strand at 803.016 kb on - strand at 803.032 kb on - strand at 803.033 kb on + strand at 803.036 kb on - strand at 803.036 kb on - strand at 803.037 kb on + strand at 803.046 kb on + strand at 803.081 kb on + strand at 803.126 kb on + strand at 803.130 kb on - strand at 803.151 kb on - strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.164 kb on + strand, within MMP_RS04225 at 803.186 kb on - strand, within MMP_RS04225 at 803.196 kb on + strand, within MMP_RS04225 at 803.264 kb on - strand, within MMP_RS04225 at 803.265 kb on + strand, within MMP_RS04225 at 803.359 kb on - strand, within MMP_RS04225 at 803.405 kb on - strand, within MMP_RS04225 at 803.405 kb on - strand, within MMP_RS04225 at 803.476 kb on + strand, within MMP_RS04225 at 803.477 kb on - strand, within MMP_RS04225 at 803.622 kb on - strand at 803.622 kb on - strand at 803.623 kb on + strand at 803.623 kb on + strand at 803.624 kb on - strand at 803.624 kb on - strand at 803.624 kb on - strand at 803.643 kb on - strand at 803.643 kb on - strand at 803.659 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.664 kb on - strand at 803.694 kb on - strand at 803.694 kb on - strand at 803.695 kb on + strand at 803.703 kb on - strand at 803.714 kb on - strand at 803.714 kb on - strand at 803.715 kb on + strand at 803.715 kb on + strand at 803.715 kb on + strand at 803.826 kb on - strand at 803.827 kb on + strand at 803.852 kb on + strand at 803.865 kb on + strand at 803.921 kb on + strand, within MMP_RS04230 at 803.921 kb on + strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.947 kb on + strand, within MMP_RS04230 at 804.080 kb on + strand, within MMP_RS04230 at 804.157 kb on - strand, within MMP_RS04230 at 804.173 kb on + strand, within MMP_RS04230 at 804.198 kb on - strand, within MMP_RS04230 at 804.200 kb on - strand, within MMP_RS04230 at 804.249 kb on + strand, within MMP_RS04230 at 804.296 kb on + strand, within MMP_RS04230 at 804.298 kb on - strand, within MMP_RS04230 at 804.424 kb on - strand, within MMP_RS04230 at 804.424 kb on - strand, within MMP_RS04230 at 804.515 kb on - strand, within MMP_RS04230 at 804.548 kb on - strand, within MMP_RS04230 at 804.607 kb on + strand, within MMP_RS04230 at 804.607 kb on + strand, within MMP_RS04230
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 802,265 - MMP_RS04215 0.87 -2.1 802,407 + +0.4 802,443 + +0.9 802,445 + +0.1 802,469 + -0.1 802,474 + +1.2 802,529 + MMP_RS04220 0.19 -1.3 802,587 - MMP_RS04220 0.28 +0.7 802,628 - MMP_RS04220 0.35 -0.0 802,660 - MMP_RS04220 0.40 +1.2 802,661 + MMP_RS04220 0.41 -0.0 802,661 + MMP_RS04220 0.41 -1.4 802,661 + MMP_RS04220 0.41 +0.4 802,661 + MMP_RS04220 0.41 +0.9 802,680 + MMP_RS04220 0.44 -1.2 802,723 - MMP_RS04220 0.51 -1.8 802,748 - MMP_RS04220 0.55 +1.0 802,869 - MMP_RS04220 0.75 +0.0 802,879 - MMP_RS04220 0.76 +1.1 802,880 + MMP_RS04220 0.77 -0.4 802,883 - MMP_RS04220 0.77 -0.5 802,971 - +0.9 802,971 - +0.6 802,971 - -0.8 802,971 - -0.3 802,971 - +0.6 802,972 + -0.1 802,972 + +0.4 803,016 - -0.0 803,032 - +0.4 803,033 + -0.2 803,036 - +1.2 803,036 - -1.3 803,037 + +0.5 803,046 + -0.6 803,081 + +1.3 803,126 + +1.1 803,130 - +0.6 803,151 - -1.6 803,152 + +0.2 803,152 + +3.1 803,164 + MMP_RS04225 0.11 -1.1 803,186 - MMP_RS04225 0.15 +1.1 803,196 + MMP_RS04225 0.17 +1.4 803,264 - MMP_RS04225 0.30 +0.3 803,265 + MMP_RS04225 0.30 -0.2 803,359 - MMP_RS04225 0.49 +1.0 803,405 - MMP_RS04225 0.58 +1.3 803,405 - MMP_RS04225 0.58 +1.9 803,476 + MMP_RS04225 0.72 -0.2 803,477 - MMP_RS04225 0.72 +1.7 803,622 - -1.1 803,622 - +0.2 803,623 + +2.8 803,623 + -0.5 803,624 - +1.8 803,624 - +0.6 803,624 - +0.1 803,643 - -0.7 803,643 - -1.6 803,659 + -1.0 803,663 + -1.6 803,663 + -1.2 803,663 + -1.1 803,663 + +0.6 803,664 - +0.5 803,694 - +0.7 803,694 - -0.4 803,695 + +2.0 803,703 - +3.5 803,714 - +2.1 803,714 - -0.1 803,715 + +2.7 803,715 + -0.4 803,715 + +1.5 803,826 - -0.0 803,827 + -0.6 803,852 + +0.0 803,865 + +0.3 803,921 + MMP_RS04230 0.10 -0.5 803,921 + MMP_RS04230 0.10 -1.1 803,946 - MMP_RS04230 0.11 -1.4 803,946 - MMP_RS04230 0.11 -0.4 803,946 - MMP_RS04230 0.11 -0.8 803,947 + MMP_RS04230 0.11 -0.6 804,080 + MMP_RS04230 0.18 +1.4 804,157 - MMP_RS04230 0.21 -0.6 804,173 + MMP_RS04230 0.22 -1.5 804,198 - MMP_RS04230 0.23 +0.9 804,200 - MMP_RS04230 0.23 -4.5 804,249 + MMP_RS04230 0.25 -0.6 804,296 + MMP_RS04230 0.28 +0.3 804,298 - MMP_RS04230 0.28 +0.9 804,424 - MMP_RS04230 0.34 -1.2 804,424 - MMP_RS04230 0.34 -2.8 804,515 - MMP_RS04230 0.38 +0.7 804,548 - MMP_RS04230 0.39 -2.3 804,607 + MMP_RS04230 0.42 -2.8 804,607 + MMP_RS04230 0.42 +1.8
Or see this region's nucleotide sequence