Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03950

Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03940 and MMP_RS03945 are separated by 28 nucleotidesMMP_RS03945 and MMP_RS03950 are separated by 2 nucleotidesMMP_RS03950 and MMP_RS03955 are separated by 19 nucleotides MMP_RS03940: MMP_RS03940 - McrC family protein, at 748,258 to 749,538 _RS03940 MMP_RS03945: MMP_RS03945 - nucleoside triphosphate pyrophosphohydrolase, at 749,567 to 749,875 _RS03945 MMP_RS03950: MMP_RS03950 - HNH endonuclease, at 749,878 to 750,849 _RS03950 MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053 _RS03955 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 748.988 kb on - strand, within MMP_RS03940at 749.102 kb on + strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940at 749.271 kb on - strand, within MMP_RS03940at 749.340 kb on - strand, within MMP_RS03940at 749.340 kb on - strand, within MMP_RS03940at 749.355 kb on + strand, within MMP_RS03940at 749.360 kb on + strand, within MMP_RS03940at 749.372 kb on + strand, within MMP_RS03940at 749.397 kb on + strand, within MMP_RS03940at 749.397 kb on + strand, within MMP_RS03940at 749.445 kb on - strandat 749.459 kb on + strandat 749.509 kb on + strandat 749.545 kb on + strandat 749.545 kb on + strandat 749.549 kb on - strandat 749.550 kb on + strandat 749.550 kb on + strandat 749.551 kb on - strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.564 kb on + strandat 749.569 kb on + strandat 749.587 kb on - strandat 749.876 kb on + strandat 749.876 kb on + strandat 749.908 kb on + strandat 749.913 kb on + strandat 749.913 kb on + strandat 749.935 kb on - strandat 749.936 kb on + strandat 750.102 kb on + strand, within MMP_RS03950at 750.105 kb on - strand, within MMP_RS03950at 750.193 kb on + strand, within MMP_RS03950at 750.200 kb on + strand, within MMP_RS03950at 750.269 kb on + strand, within MMP_RS03950at 750.582 kb on + strand, within MMP_RS03950at 750.584 kb on - strand, within MMP_RS03950at 750.608 kb on - strand, within MMP_RS03950at 750.662 kb on - strand, within MMP_RS03950at 750.694 kb on - strand, within MMP_RS03950at 750.695 kb on + strand, within MMP_RS03950at 750.816 kb on - strandat 750.883 kb on + strandat 750.883 kb on + strandat 750.930 kb on + strandat 750.937 kb on + strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.982 kb on + strandat 750.983 kb on - strandat 750.983 kb on - strandat 750.983 kb on - strandat 750.990 kb on - strand, within MMP_RS03955at 750.991 kb on + strand, within MMP_RS03955at 751.083 kb on - strand, within MMP_RS03955at 751.083 kb on - strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.161 kb on + strand, within MMP_RS03955at 751.205 kb on - strand, within MMP_RS03955at 751.218 kb on - strand, within MMP_RS03955at 751.253 kb on + strand, within MMP_RS03955at 751.253 kb on + strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.670 kb on + strand, within MMP_RS03955at 751.761 kb on - strand, within MMP_RS03955at 751.799 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
remove
748,988 - MMP_RS03940 0.57 -0.2
749,102 + MMP_RS03940 0.66 -0.4
749,132 - MMP_RS03940 0.68 +1.4
749,132 - MMP_RS03940 0.68 -1.5
749,271 - MMP_RS03940 0.79 -1.4
749,340 - MMP_RS03940 0.84 -0.4
749,340 - MMP_RS03940 0.84 +1.2
749,355 + MMP_RS03940 0.86 -2.9
749,360 + MMP_RS03940 0.86 -0.5
749,372 + MMP_RS03940 0.87 +1.1
749,397 + MMP_RS03940 0.89 +1.9
749,397 + MMP_RS03940 0.89 +1.1
749,445 - -0.5
749,459 + +0.9
749,509 + -1.2
749,545 + +0.2
749,545 + +0.9
749,549 - -0.3
749,550 + +0.4
749,550 + -0.1
749,551 - +1.3
749,552 + -0.6
749,552 + -0.7
749,552 + +1.0
749,564 + -0.3
749,569 + +1.3
749,587 - -0.4
749,876 + +0.6
749,876 + +0.2
749,908 + -1.5
749,913 + -0.7
749,913 + +1.6
749,935 - -0.0
749,936 + +0.8
750,102 + MMP_RS03950 0.23 -0.7
750,105 - MMP_RS03950 0.23 +0.8
750,193 + MMP_RS03950 0.32 -1.4
750,200 + MMP_RS03950 0.33 +1.9
750,269 + MMP_RS03950 0.40 +0.1
750,582 + MMP_RS03950 0.72 -0.9
750,584 - MMP_RS03950 0.73 -1.9
750,608 - MMP_RS03950 0.75 -0.7
750,662 - MMP_RS03950 0.81 +0.7
750,694 - MMP_RS03950 0.84 -0.9
750,695 + MMP_RS03950 0.84 +0.5
750,816 - +0.3
750,883 + +1.6
750,883 + -1.8
750,930 + -0.3
750,937 + -0.2
750,981 - -0.5
750,981 - -1.6
750,982 + -1.0
750,983 - +1.1
750,983 - -1.2
750,983 - -0.5
750,990 - MMP_RS03955 0.10 -0.1
750,991 + MMP_RS03955 0.10 +1.8
751,083 - MMP_RS03955 0.18 +0.4
751,083 - MMP_RS03955 0.18 +0.8
751,084 + MMP_RS03955 0.18 +0.9
751,084 + MMP_RS03955 0.18 +0.4
751,084 + MMP_RS03955 0.18 -0.2
751,161 + MMP_RS03955 0.25 +1.4
751,205 - MMP_RS03955 0.28 +1.4
751,218 - MMP_RS03955 0.29 +0.1
751,253 + MMP_RS03955 0.32 +1.1
751,253 + MMP_RS03955 0.32 +1.1
751,427 - MMP_RS03955 0.47 +0.9
751,427 - MMP_RS03955 0.47 +1.6
751,427 - MMP_RS03955 0.47 +0.0
751,670 + MMP_RS03955 0.68 -0.2
751,761 - MMP_RS03955 0.75 -0.5
751,799 + MMP_RS03955 0.78 -1.5
751,801 + MMP_RS03955 0.79 -1.0
751,801 + MMP_RS03955 0.79 +0.9
751,801 + MMP_RS03955 0.79 +3.5
751,801 + MMP_RS03955 0.79 +1.8
751,842 + MMP_RS03955 0.82 +0.8
751,842 + MMP_RS03955 0.82 -1.0

Or see this region's nucleotide sequence