Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03835 and MMP_RS03840 are separated by 136 nucleotides MMP_RS03840 and MMP_RS03845 are separated by 74 nucleotides MMP_RS03845 and MMP_RS08990 are separated by 27 nucleotides MMP_RS08990 and MMP_RS03850 are separated by 125 nucleotides MMP_RS03850 and MMP_RS03855 are separated by 24 nucleotides
MMP_RS03835: MMP_RS03835 - MATE family efflux transporter, at 725,998 to 727,350
_RS03835
MMP_RS03840: MMP_RS03840 - hypothetical protein, at 727,487 to 727,804
_RS03840
MMP_RS03845: MMP_RS03845 - DNA adenine methylase, at 727,879 to 728,799
_RS03845
MMP_RS08990: MMP_RS08990 - hypothetical protein, at 728,827 to 728,997
_RS08990
MMP_RS03850: MMP_RS03850 - PRC-barrel domain-containing protein, at 729,123 to 729,377
_RS03850
MMP_RS03855: MMP_RS03855 - aspartate dehydrogenase, at 729,402 to 730,205
_RS03855
Position (kb) 727
728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 726.956 kb on - strand, within MMP_RS03835 at 726.957 kb on + strand, within MMP_RS03835 at 726.985 kb on + strand, within MMP_RS03835 at 727.027 kb on + strand, within MMP_RS03835 at 727.045 kb on - strand, within MMP_RS03835 at 727.045 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.053 kb on + strand, within MMP_RS03835 at 727.053 kb on + strand, within MMP_RS03835 at 727.058 kb on + strand, within MMP_RS03835 at 727.070 kb on + strand, within MMP_RS03835 at 727.120 kb on - strand, within MMP_RS03835 at 727.147 kb on + strand, within MMP_RS03835 at 727.161 kb on - strand, within MMP_RS03835 at 727.234 kb on - strand at 727.263 kb on - strand at 727.266 kb on - strand at 727.314 kb on - strand at 727.314 kb on - strand at 727.315 kb on + strand at 727.350 kb on - strand at 727.382 kb on + strand at 727.391 kb on - strand at 727.429 kb on - strand at 727.429 kb on - strand at 727.429 kb on - strand at 727.430 kb on + strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.432 kb on + strand at 727.432 kb on + strand at 727.432 kb on + strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.468 kb on - strand at 727.469 kb on + strand at 727.469 kb on + strand at 727.469 kb on + strand at 727.484 kb on - strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.486 kb on - strand at 727.486 kb on - strand at 727.486 kb on - strand at 727.497 kb on + strand at 727.528 kb on + strand, within MMP_RS03840 at 727.564 kb on - strand, within MMP_RS03840 at 727.656 kb on - strand, within MMP_RS03840 at 727.781 kb on + strand at 727.782 kb on - strand at 727.810 kb on - strand at 727.848 kb on + strand at 727.873 kb on - strand at 727.878 kb on - strand at 727.879 kb on + strand at 728.024 kb on + strand, within MMP_RS03845 at 728.075 kb on - strand, within MMP_RS03845 at 728.198 kb on + strand, within MMP_RS03845 at 728.219 kb on + strand, within MMP_RS03845 at 728.323 kb on + strand, within MMP_RS03845 at 728.382 kb on + strand, within MMP_RS03845 at 728.472 kb on + strand, within MMP_RS03845 at 728.583 kb on + strand, within MMP_RS03845 at 728.602 kb on + strand, within MMP_RS03845 at 728.626 kb on - strand, within MMP_RS03845 at 728.627 kb on + strand, within MMP_RS03845 at 728.627 kb on + strand, within MMP_RS03845 at 728.640 kb on - strand, within MMP_RS03845 at 728.641 kb on + strand, within MMP_RS03845 at 728.658 kb on - strand, within MMP_RS03845 at 728.704 kb on + strand, within MMP_RS03845 at 728.777 kb on - strand at 728.823 kb on - strand at 728.823 kb on - strand at 728.823 kb on - strand at 728.824 kb on + strand at 728.951 kb on + strand, within MMP_RS08990 at 728.952 kb on - strand, within MMP_RS08990 at 728.952 kb on - strand, within MMP_RS08990 at 728.953 kb on + strand, within MMP_RS08990 at 728.984 kb on - strand at 728.985 kb on + strand at 728.985 kb on + strand at 728.985 kb on + strand at 728.997 kb on - strand at 728.997 kb on - strand at 728.998 kb on + strand at 728.998 kb on + strand at 728.998 kb on + strand at 729.003 kb on + strand at 729.033 kb on - strand at 729.034 kb on + strand at 729.042 kb on - strand at 729.042 kb on - strand at 729.042 kb on - strand at 729.047 kb on - strand at 729.047 kb on - strand at 729.048 kb on + strand at 729.070 kb on - strand at 729.076 kb on + strand at 729.080 kb on - strand at 729.089 kb on - strand at 729.120 kb on + strand at 729.120 kb on + strand at 729.168 kb on + strand at 729.178 kb on - strand at 729.180 kb on - strand at 729.180 kb on - strand at 729.181 kb on + strand at 729.181 kb on + strand at 729.219 kb on + strand at 729.384 kb on + strand at 729.387 kb on - strand at 729.388 kb on + strand at 729.419 kb on + strand at 729.755 kb on + strand at 729.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 726,956 - MMP_RS03835 0.71 +0.7 726,957 + MMP_RS03835 0.71 -0.5 726,985 + MMP_RS03835 0.73 -0.6 727,027 + MMP_RS03835 0.76 -0.8 727,045 - MMP_RS03835 0.77 -2.5 727,045 - MMP_RS03835 0.77 +0.0 727,052 - MMP_RS03835 0.78 +0.6 727,052 - MMP_RS03835 0.78 +0.9 727,052 - MMP_RS03835 0.78 +0.9 727,053 + MMP_RS03835 0.78 +0.1 727,053 + MMP_RS03835 0.78 +0.9 727,058 + MMP_RS03835 0.78 -0.5 727,070 + MMP_RS03835 0.79 -0.7 727,120 - MMP_RS03835 0.83 +0.4 727,147 + MMP_RS03835 0.85 -3.0 727,161 - MMP_RS03835 0.86 -1.1 727,234 - +0.4 727,263 - +0.3 727,266 - -0.3 727,314 - +3.4 727,314 - -0.0 727,315 + -2.5 727,350 - -1.0 727,382 + +1.4 727,391 - +0.5 727,429 - -1.1 727,429 - -0.5 727,429 - -1.0 727,430 + -0.3 727,431 - -1.2 727,431 - +1.3 727,431 - -0.6 727,431 - -0.6 727,431 - +0.0 727,432 + -0.1 727,432 + +0.2 727,432 + -0.0 727,433 - +0.6 727,433 - +0.7 727,433 - +0.9 727,433 - +0.4 727,433 - +0.6 727,434 + -1.1 727,434 + -0.1 727,434 + -0.0 727,434 + +0.9 727,468 - -0.7 727,469 + +0.1 727,469 + -0.1 727,469 + -1.9 727,484 - +0.6 727,485 + +1.6 727,485 + +0.6 727,485 + +1.7 727,485 + -0.9 727,486 - -0.2 727,486 - -1.2 727,486 - -0.9 727,497 + +0.8 727,528 + MMP_RS03840 0.13 +0.9 727,564 - MMP_RS03840 0.24 -0.9 727,656 - MMP_RS03840 0.53 -1.2 727,781 + -2.4 727,782 - +0.4 727,810 - +0.2 727,848 + +0.2 727,873 - -1.3 727,878 - +0.5 727,879 + +0.9 728,024 + MMP_RS03845 0.16 -0.4 728,075 - MMP_RS03845 0.21 -0.9 728,198 + MMP_RS03845 0.35 +0.0 728,219 + MMP_RS03845 0.37 +0.5 728,323 + MMP_RS03845 0.48 -1.0 728,382 + MMP_RS03845 0.55 -0.3 728,472 + MMP_RS03845 0.64 +0.6 728,583 + MMP_RS03845 0.76 -1.0 728,602 + MMP_RS03845 0.79 -1.6 728,626 - MMP_RS03845 0.81 -0.1 728,627 + MMP_RS03845 0.81 -2.0 728,627 + MMP_RS03845 0.81 -1.0 728,640 - MMP_RS03845 0.83 +0.1 728,641 + MMP_RS03845 0.83 -3.7 728,658 - MMP_RS03845 0.85 +0.5 728,704 + MMP_RS03845 0.90 +0.7 728,777 - -0.6 728,823 - -0.3 728,823 - -1.5 728,823 - -0.9 728,824 + -0.1 728,951 + MMP_RS08990 0.73 -0.0 728,952 - MMP_RS08990 0.73 +0.1 728,952 - MMP_RS08990 0.73 -0.9 728,953 + MMP_RS08990 0.74 +0.2 728,984 - +1.9 728,985 + -1.5 728,985 + +2.3 728,985 + -0.4 728,997 - -0.4 728,997 - +4.3 728,998 + +0.9 728,998 + +1.9 728,998 + -1.3 729,003 + -0.2 729,033 - +0.1 729,034 + -0.3 729,042 - +0.1 729,042 - -1.4 729,042 - +1.4 729,047 - -0.0 729,047 - -0.4 729,048 + -0.7 729,070 - +2.5 729,076 + -1.4 729,080 - +0.4 729,089 - -2.7 729,120 + +0.1 729,120 + +1.8 729,168 + +2.3 729,178 - -0.6 729,180 - -0.1 729,180 - -3.3 729,181 + -3.0 729,181 + -1.3 729,219 + -1.1 729,384 + -2.1 729,387 - -2.1 729,388 + -0.8 729,419 + -0.2 729,755 + -2.5 729,760 - -2.5
Or see this region's nucleotide sequence