Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03570 and MMP_RS03575 are separated by 164 nucleotides MMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides
MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366
_RS03570
MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097
_RS03575
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
Position (kb) 670
671
672 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 669.687 kb on + strand, within MMP_RS03570 at 669.798 kb on + strand, within MMP_RS03570 at 669.825 kb on + strand, within MMP_RS03570 at 669.867 kb on + strand, within MMP_RS03570 at 669.883 kb on - strand, within MMP_RS03570 at 669.884 kb on + strand, within MMP_RS03570 at 669.906 kb on + strand, within MMP_RS03570 at 669.914 kb on - strand, within MMP_RS03570 at 669.931 kb on - strand, within MMP_RS03570 at 669.945 kb on - strand, within MMP_RS03570 at 670.069 kb on - strand, within MMP_RS03570 at 670.334 kb on - strand at 670.335 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.356 kb on + strand at 670.392 kb on + strand at 670.437 kb on + strand at 670.440 kb on - strand at 670.466 kb on - strand at 670.536 kb on - strand at 670.558 kb on - strand at 670.559 kb on + strand at 670.583 kb on + strand at 670.598 kb on - strand, within MMP_RS03575 at 670.616 kb on + strand, within MMP_RS03575 at 670.655 kb on - strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.671 kb on - strand, within MMP_RS03575 at 670.683 kb on - strand, within MMP_RS03575 at 670.778 kb on + strand, within MMP_RS03575 at 670.805 kb on + strand, within MMP_RS03575 at 670.874 kb on + strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.981 kb on - strand, within MMP_RS03575 at 671.057 kb on + strand at 671.088 kb on - strand at 671.089 kb on + strand at 671.143 kb on + strand at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.152 kb on + strand at 671.185 kb on - strand at 671.312 kb on + strand at 671.410 kb on + strand, within MMP_RS03580 at 671.521 kb on - strand, within MMP_RS03580 at 671.606 kb on - strand, within MMP_RS03580 at 671.754 kb on - strand, within MMP_RS03580 at 671.960 kb on + strand, within MMP_RS03580 at 672.061 kb on + strand, within MMP_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 669,687 + MMP_RS03570 0.45 +3.6 669,798 + MMP_RS03570 0.54 +2.9 669,825 + MMP_RS03570 0.56 +3.3 669,867 + MMP_RS03570 0.60 +3.5 669,883 - MMP_RS03570 0.61 +3.7 669,884 + MMP_RS03570 0.61 +3.8 669,906 + MMP_RS03570 0.63 +4.0 669,914 - MMP_RS03570 0.64 +4.8 669,931 - MMP_RS03570 0.65 +3.2 669,945 - MMP_RS03570 0.66 +4.9 670,069 - MMP_RS03570 0.76 +2.9 670,334 - +5.1 670,335 + +3.4 670,350 + +1.6 670,350 + +4.3 670,350 + +4.1 670,356 + +2.3 670,392 + +3.3 670,437 + +1.8 670,440 - -0.5 670,466 - +3.7 670,536 - +1.2 670,558 - +0.6 670,559 + -1.3 670,583 + +0.3 670,598 - MMP_RS03575 0.12 -2.8 670,616 + MMP_RS03575 0.15 +0.3 670,655 - MMP_RS03575 0.22 +0.2 670,656 + MMP_RS03575 0.22 -0.5 670,656 + MMP_RS03575 0.22 +2.2 670,656 + MMP_RS03575 0.22 -2.7 670,671 - MMP_RS03575 0.25 +1.0 670,683 - MMP_RS03575 0.27 +0.1 670,778 + MMP_RS03575 0.44 +0.2 670,805 + MMP_RS03575 0.48 +0.7 670,874 + MMP_RS03575 0.60 +0.1 670,908 - MMP_RS03575 0.66 -1.3 670,908 - MMP_RS03575 0.66 -0.2 670,908 - MMP_RS03575 0.66 +0.5 670,981 - MMP_RS03575 0.79 -0.8 671,057 + +1.3 671,088 - -0.2 671,089 + +1.0 671,143 + +0.6 671,143 + -0.1 671,144 - +0.7 671,144 - +1.6 671,152 + -0.2 671,185 - -0.2 671,312 + -2.5 671,410 + MMP_RS03580 0.18 +0.2 671,521 - MMP_RS03580 0.28 -2.7 671,606 - MMP_RS03580 0.36 -2.6 671,754 - MMP_RS03580 0.48 -4.0 671,960 + MMP_RS03580 0.66 -3.3 672,061 + MMP_RS03580 0.75 -1.6
Or see this region's nucleotide sequence