Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03570

Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03560 and MMP_RS03565 are separated by 90 nucleotidesMMP_RS03565 and MMP_RS03570 are separated by 36 nucleotidesMMP_RS03570 and MMP_RS03575 are separated by 164 nucleotidesMMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides MMP_RS03560: MMP_RS03560 - Na+/H+ antiporter NhaC family protein, at 666,725 to 668,302 _RS03560 MMP_RS03565: MMP_RS03565 - uracil phosphoribosyltransferase, at 668,393 to 669,088 _RS03565 MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366 _RS03570 MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097 _RS03575 MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348 _RS03580 Position (kb) 669 670 671Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 668.144 kb on + strand, within MMP_RS03560at 668.147 kb on - strandat 668.152 kb on - strandat 668.173 kb on - strandat 668.193 kb on + strandat 668.193 kb on + strandat 668.229 kb on - strandat 668.285 kb on - strandat 668.286 kb on + strandat 668.289 kb on + strandat 668.302 kb on - strandat 668.302 kb on - strandat 668.307 kb on + strandat 668.307 kb on + strandat 668.308 kb on - strandat 668.309 kb on + strandat 668.329 kb on + strandat 668.354 kb on + strandat 668.354 kb on + strandat 668.356 kb on + strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.480 kb on - strand, within MMP_RS03565at 668.480 kb on - strand, within MMP_RS03565at 668.484 kb on - strand, within MMP_RS03565at 668.494 kb on - strand, within MMP_RS03565at 668.591 kb on - strand, within MMP_RS03565at 668.648 kb on + strand, within MMP_RS03565at 668.719 kb on + strand, within MMP_RS03565at 668.729 kb on - strand, within MMP_RS03565at 668.730 kb on + strand, within MMP_RS03565at 668.734 kb on - strand, within MMP_RS03565at 668.842 kb on - strand, within MMP_RS03565at 668.845 kb on - strand, within MMP_RS03565at 668.860 kb on - strand, within MMP_RS03565at 669.032 kb on - strandat 669.084 kb on + strandat 669.088 kb on - strandat 669.114 kb on + strandat 669.119 kb on + strandat 669.279 kb on + strand, within MMP_RS03570at 669.310 kb on - strand, within MMP_RS03570at 669.364 kb on - strand, within MMP_RS03570at 669.416 kb on + strand, within MMP_RS03570at 669.443 kb on - strand, within MMP_RS03570at 669.687 kb on + strand, within MMP_RS03570at 669.798 kb on + strand, within MMP_RS03570at 669.825 kb on + strand, within MMP_RS03570at 669.867 kb on + strand, within MMP_RS03570at 669.883 kb on - strand, within MMP_RS03570at 669.884 kb on + strand, within MMP_RS03570at 669.906 kb on + strand, within MMP_RS03570at 669.914 kb on - strand, within MMP_RS03570at 669.931 kb on - strand, within MMP_RS03570at 669.945 kb on - strand, within MMP_RS03570at 670.069 kb on - strand, within MMP_RS03570at 670.334 kb on - strandat 670.335 kb on + strandat 670.350 kb on + strandat 670.350 kb on + strandat 670.350 kb on + strandat 670.356 kb on + strandat 670.392 kb on + strandat 670.437 kb on + strandat 670.440 kb on - strandat 670.466 kb on - strandat 670.536 kb on - strandat 670.558 kb on - strandat 670.559 kb on + strandat 670.583 kb on + strandat 670.598 kb on - strand, within MMP_RS03575at 670.616 kb on + strand, within MMP_RS03575at 670.655 kb on - strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.671 kb on - strand, within MMP_RS03575at 670.683 kb on - strand, within MMP_RS03575at 670.778 kb on + strand, within MMP_RS03575at 670.805 kb on + strand, within MMP_RS03575at 670.874 kb on + strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.981 kb on - strand, within MMP_RS03575at 671.057 kb on + strandat 671.088 kb on - strandat 671.089 kb on + strandat 671.143 kb on + strandat 671.143 kb on + strandat 671.144 kb on - strandat 671.144 kb on - strandat 671.152 kb on + strandat 671.185 kb on - strandat 671.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
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668,144 + MMP_RS03560 0.90 -0.3
668,147 - -0.2
668,152 - -0.8
668,173 - -0.8
668,193 + -0.5
668,193 + +2.9
668,229 - -2.5
668,285 - -0.4
668,286 + -0.1
668,289 + -0.5
668,302 - -3.6
668,302 - -0.5
668,307 + +0.0
668,307 + +1.4
668,308 - -1.2
668,309 + +1.4
668,329 + -0.7
668,354 + +0.1
668,354 + -0.7
668,356 + -0.5
668,386 - +1.6
668,386 - +2.4
668,386 - +2.7
668,386 - +1.9
668,386 - +1.9
668,480 - MMP_RS03565 0.12 +4.4
668,480 - MMP_RS03565 0.12 +2.3
668,484 - MMP_RS03565 0.13 +4.8
668,494 - MMP_RS03565 0.15 +4.9
668,591 - MMP_RS03565 0.28 +4.3
668,648 + MMP_RS03565 0.37 +2.3
668,719 + MMP_RS03565 0.47 +3.5
668,729 - MMP_RS03565 0.48 +3.8
668,730 + MMP_RS03565 0.48 +2.9
668,734 - MMP_RS03565 0.49 +4.1
668,842 - MMP_RS03565 0.65 +3.8
668,845 - MMP_RS03565 0.65 +2.7
668,860 - MMP_RS03565 0.67 +1.2
669,032 - +3.8
669,084 + +2.0
669,088 - +0.9
669,114 + +4.5
669,119 + +3.0
669,279 + MMP_RS03570 0.12 +3.5
669,310 - MMP_RS03570 0.15 +3.6
669,364 - MMP_RS03570 0.19 +4.1
669,416 + MMP_RS03570 0.23 +3.8
669,443 - MMP_RS03570 0.26 +3.0
669,687 + MMP_RS03570 0.45 +3.6
669,798 + MMP_RS03570 0.54 +2.9
669,825 + MMP_RS03570 0.56 +3.3
669,867 + MMP_RS03570 0.60 +3.5
669,883 - MMP_RS03570 0.61 +3.7
669,884 + MMP_RS03570 0.61 +3.8
669,906 + MMP_RS03570 0.63 +4.0
669,914 - MMP_RS03570 0.64 +4.8
669,931 - MMP_RS03570 0.65 +3.2
669,945 - MMP_RS03570 0.66 +4.9
670,069 - MMP_RS03570 0.76 +2.9
670,334 - +5.1
670,335 + +3.4
670,350 + +1.6
670,350 + +4.3
670,350 + +4.1
670,356 + +2.3
670,392 + +3.3
670,437 + +1.8
670,440 - -0.5
670,466 - +3.7
670,536 - +1.2
670,558 - +0.6
670,559 + -1.3
670,583 + +0.3
670,598 - MMP_RS03575 0.12 -2.8
670,616 + MMP_RS03575 0.15 +0.3
670,655 - MMP_RS03575 0.22 +0.2
670,656 + MMP_RS03575 0.22 -0.5
670,656 + MMP_RS03575 0.22 +2.2
670,656 + MMP_RS03575 0.22 -2.7
670,671 - MMP_RS03575 0.25 +1.0
670,683 - MMP_RS03575 0.27 +0.1
670,778 + MMP_RS03575 0.44 +0.2
670,805 + MMP_RS03575 0.48 +0.7
670,874 + MMP_RS03575 0.60 +0.1
670,908 - MMP_RS03575 0.66 -1.3
670,908 - MMP_RS03575 0.66 -0.2
670,908 - MMP_RS03575 0.66 +0.5
670,981 - MMP_RS03575 0.79 -0.8
671,057 + +1.3
671,088 - -0.2
671,089 + +1.0
671,143 + +0.6
671,143 + -0.1
671,144 - +0.7
671,144 - +1.6
671,152 + -0.2
671,185 - -0.2
671,312 + -2.5

Or see this region's nucleotide sequence