Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03405 and MMP_RS03410 are separated by 4 nucleotides MMP_RS03410 and MMP_RS03415 are separated by 161 nucleotides
MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675
_RS03405
MMP_RS03410: MMP_RS03410 - hypothetical protein, at 639,680 to 641,215
_RS03410
MMP_RS03415: MMP_RS03415 - acetolactate synthase large subunit, at 641,377 to 643,140
_RS03415
Position (kb) 639
640
641
642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 638.751 kb on + strand at 638.951 kb on - strand, within MMP_RS03405 at 638.952 kb on + strand, within MMP_RS03405 at 639.010 kb on + strand, within MMP_RS03405 at 639.060 kb on - strand, within MMP_RS03405 at 639.075 kb on - strand, within MMP_RS03405 at 639.388 kb on + strand, within MMP_RS03405 at 639.402 kb on - strand, within MMP_RS03405 at 639.451 kb on - strand, within MMP_RS03405 at 639.470 kb on + strand, within MMP_RS03405 at 639.567 kb on - strand, within MMP_RS03405 at 639.969 kb on - strand, within MMP_RS03410 at 640.226 kb on + strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.268 kb on + strand, within MMP_RS03410 at 640.289 kb on - strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.321 kb on - strand, within MMP_RS03410 at 640.381 kb on + strand, within MMP_RS03410 at 640.659 kb on - strand, within MMP_RS03410 at 640.670 kb on + strand, within MMP_RS03410 at 640.673 kb on - strand, within MMP_RS03410 at 640.679 kb on + strand, within MMP_RS03410 at 640.793 kb on - strand, within MMP_RS03410 at 641.240 kb on + strand at 641.240 kb on + strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.242 kb on + strand at 641.255 kb on - strand at 641.256 kb on + strand at 641.284 kb on - strand at 641.297 kb on - strand at 641.298 kb on + strand at 641.301 kb on - strand at 641.302 kb on + strand at 641.302 kb on + strand at 641.304 kb on + strand at 641.322 kb on + strand at 641.363 kb on - strand at 642.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 638,751 + +0.4 638,951 - MMP_RS03405 0.29 -0.5 638,952 + MMP_RS03405 0.29 -3.1 639,010 + MMP_RS03405 0.35 -2.3 639,060 - MMP_RS03405 0.40 +1.4 639,075 - MMP_RS03405 0.41 -1.8 639,388 + MMP_RS03405 0.72 +0.5 639,402 - MMP_RS03405 0.73 -0.0 639,451 - MMP_RS03405 0.78 +1.8 639,470 + MMP_RS03405 0.80 +2.0 639,567 - MMP_RS03405 0.89 +0.7 639,969 - MMP_RS03410 0.19 +1.0 640,226 + MMP_RS03410 0.36 +0.8 640,267 - MMP_RS03410 0.38 -2.3 640,267 - MMP_RS03410 0.38 +0.4 640,268 + MMP_RS03410 0.38 +1.4 640,289 - MMP_RS03410 0.40 +0.8 640,290 + MMP_RS03410 0.40 +0.1 640,290 + MMP_RS03410 0.40 +0.4 640,321 - MMP_RS03410 0.42 +0.2 640,381 + MMP_RS03410 0.46 +0.9 640,659 - MMP_RS03410 0.64 +0.6 640,670 + MMP_RS03410 0.64 +1.7 640,673 - MMP_RS03410 0.65 +1.4 640,679 + MMP_RS03410 0.65 +1.4 640,793 - MMP_RS03410 0.72 +0.9 641,240 + +1.4 641,240 + +2.2 641,241 - +0.5 641,241 - +0.6 641,241 - -1.8 641,242 + -0.9 641,255 - -0.2 641,256 + +2.2 641,284 - -4.3 641,297 - -1.2 641,298 + -0.4 641,301 - -0.9 641,302 + +0.6 641,302 + -2.1 641,304 + -3.0 641,322 + -2.0 641,363 - -2.4 642,135 - -1.5
Or see this region's nucleotide sequence