Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03390 and MMP_RS03395 are separated by 212 nucleotides MMP_RS03395 and MMP_RS03400 are separated by 1 nucleotides MMP_RS03400 and MMP_RS03405 are separated by 3 nucleotides MMP_RS03405 and MMP_RS03410 are separated by 4 nucleotides
MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821
_RS03390
MMP_RS03395: MMP_RS03395 - hypothetical protein, at 638,034 to 638,234
_RS03395
MMP_RS03400: MMP_RS03400 - archease, at 638,236 to 638,652
_RS03400
MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675
_RS03405
MMP_RS03410: MMP_RS03410 - hypothetical protein, at 639,680 to 641,215
_RS03410
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.821 kb on - strand at 637.836 kb on - strand at 637.837 kb on + strand at 637.841 kb on + strand at 637.864 kb on - strand at 637.866 kb on - strand at 637.866 kb on - strand at 637.867 kb on + strand at 637.870 kb on - strand at 637.870 kb on - strand at 637.871 kb on + strand at 637.871 kb on + strand at 637.872 kb on - strand at 637.873 kb on + strand at 637.873 kb on + strand at 637.874 kb on - strand at 637.874 kb on - strand at 637.887 kb on + strand at 637.919 kb on + strand at 637.922 kb on - strand at 637.923 kb on + strand at 637.927 kb on + strand at 638.002 kb on - strand at 638.002 kb on - strand at 638.006 kb on - strand at 638.054 kb on - strand, within MMP_RS03395 at 638.127 kb on + strand, within MMP_RS03395 at 638.132 kb on - strand, within MMP_RS03395 at 638.212 kb on + strand, within MMP_RS03395 at 638.315 kb on + strand, within MMP_RS03400 at 638.374 kb on - strand, within MMP_RS03400 at 638.375 kb on + strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.647 kb on + strand at 638.648 kb on - strand at 638.653 kb on + strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.751 kb on + strand at 638.951 kb on - strand, within MMP_RS03405 at 638.952 kb on + strand, within MMP_RS03405 at 639.010 kb on + strand, within MMP_RS03405 at 639.060 kb on - strand, within MMP_RS03405 at 639.075 kb on - strand, within MMP_RS03405 at 639.388 kb on + strand, within MMP_RS03405 at 639.402 kb on - strand, within MMP_RS03405 at 639.451 kb on - strand, within MMP_RS03405 at 639.470 kb on + strand, within MMP_RS03405 at 639.567 kb on - strand, within MMP_RS03405 at 639.969 kb on - strand, within MMP_RS03410 at 640.226 kb on + strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.268 kb on + strand, within MMP_RS03410 at 640.289 kb on - strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.321 kb on - strand, within MMP_RS03410 at 640.381 kb on + strand, within MMP_RS03410 at 640.659 kb on - strand, within MMP_RS03410 at 640.670 kb on + strand, within MMP_RS03410 at 640.673 kb on - strand, within MMP_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 637,821 - +0.2 637,836 - +0.1 637,837 + +0.1 637,841 + +0.3 637,864 - -1.2 637,866 - -0.7 637,866 - -0.4 637,867 + -1.1 637,870 - +1.8 637,870 - -3.6 637,871 + +0.9 637,871 + -0.8 637,872 - -1.9 637,873 + +0.0 637,873 + +2.1 637,874 - +1.2 637,874 - -1.0 637,887 + +0.4 637,919 + -2.6 637,922 - +0.3 637,923 + +0.5 637,927 + -1.8 638,002 - -0.0 638,002 - +0.3 638,006 - -1.1 638,054 - MMP_RS03395 0.10 -1.1 638,127 + MMP_RS03395 0.46 +0.9 638,132 - MMP_RS03395 0.49 +0.2 638,212 + MMP_RS03395 0.89 -0.3 638,315 + MMP_RS03400 0.19 -2.3 638,374 - MMP_RS03400 0.33 -0.3 638,375 + MMP_RS03400 0.33 -2.1 638,473 - MMP_RS03400 0.57 -2.8 638,473 - MMP_RS03400 0.57 -1.9 638,647 + -1.3 638,648 - -1.4 638,653 + -1.2 638,677 - +1.5 638,677 - -0.2 638,677 - +0.2 638,677 - -0.5 638,677 - +1.5 638,677 - -0.6 638,751 + +0.4 638,951 - MMP_RS03405 0.29 -0.5 638,952 + MMP_RS03405 0.29 -3.1 639,010 + MMP_RS03405 0.35 -2.3 639,060 - MMP_RS03405 0.40 +1.4 639,075 - MMP_RS03405 0.41 -1.8 639,388 + MMP_RS03405 0.72 +0.5 639,402 - MMP_RS03405 0.73 -0.0 639,451 - MMP_RS03405 0.78 +1.8 639,470 + MMP_RS03405 0.80 +2.0 639,567 - MMP_RS03405 0.89 +0.7 639,969 - MMP_RS03410 0.19 +1.0 640,226 + MMP_RS03410 0.36 +0.8 640,267 - MMP_RS03410 0.38 -2.3 640,267 - MMP_RS03410 0.38 +0.4 640,268 + MMP_RS03410 0.38 +1.4 640,289 - MMP_RS03410 0.40 +0.8 640,290 + MMP_RS03410 0.40 +0.1 640,290 + MMP_RS03410 0.40 +0.4 640,321 - MMP_RS03410 0.42 +0.2 640,381 + MMP_RS03410 0.46 +0.9 640,659 - MMP_RS03410 0.64 +0.6 640,670 + MMP_RS03410 0.64 +1.7 640,673 - MMP_RS03410 0.65 +1.4
Or see this region's nucleotide sequence