Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides MMP_RS03345 and MMP_RS03350 are separated by 39 nucleotides MMP_RS03350 and MMP_RS03355 are separated by 108 nucleotides
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
MMP_RS03350: MMP_RS03350 - winged helix-turn-helix domain-containing protein, at 629,884 to 630,426
_RS03350
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand at 628.745 kb on - strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.795 kb on - strand, within MMP_RS03345 at 628.800 kb on - strand, within MMP_RS03345 at 628.817 kb on - strand, within MMP_RS03345 at 628.999 kb on - strand, within MMP_RS03345 at 629.048 kb on - strand, within MMP_RS03345 at 629.049 kb on + strand, within MMP_RS03345 at 629.053 kb on - strand, within MMP_RS03345 at 629.063 kb on - strand, within MMP_RS03345 at 629.064 kb on + strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.142 kb on + strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.366 kb on + strand, within MMP_RS03345 at 629.368 kb on + strand, within MMP_RS03345 at 629.557 kb on - strand, within MMP_RS03345 at 629.569 kb on + strand, within MMP_RS03345 at 629.608 kb on - strand, within MMP_RS03345 at 629.674 kb on - strand, within MMP_RS03345 at 629.754 kb on - strand at 629.760 kb on - strand at 629.768 kb on - strand at 629.790 kb on + strand at 629.801 kb on - strand at 629.802 kb on + strand at 629.802 kb on + strand at 629.804 kb on + strand at 629.805 kb on - strand at 629.845 kb on - strand at 629.883 kb on - strand at 629.952 kb on + strand, within MMP_RS03350 at 630.202 kb on + strand, within MMP_RS03350 at 630.203 kb on - strand, within MMP_RS03350 at 630.322 kb on + strand, within MMP_RS03350 at 630.407 kb on - strand at 630.412 kb on - strand at 630.413 kb on + strand at 630.483 kb on - strand at 630.575 kb on - strand at 630.599 kb on + strand at 630.599 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.631 kb on + strand at 630.713 kb on + strand at 630.730 kb on + strand at 630.794 kb on + strand, within MMP_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 627,653 + -0.8 627,726 - -1.6 627,971 - MMP_RS03340 0.41 +2.5 628,394 - +0.3 628,441 + -0.7 628,506 - -1.8 628,544 - +1.1 628,551 - +0.6 628,559 - +0.1 628,559 - +1.0 628,561 - +0.7 628,579 - -4.0 628,745 - MMP_RS03345 0.11 +0.6 628,746 + MMP_RS03345 0.11 -0.0 628,746 + MMP_RS03345 0.11 +0.1 628,795 - MMP_RS03345 0.15 -0.8 628,800 - MMP_RS03345 0.15 +0.8 628,817 - MMP_RS03345 0.17 +0.4 628,999 - MMP_RS03345 0.31 +0.8 629,048 - MMP_RS03345 0.35 -0.7 629,049 + MMP_RS03345 0.35 -1.1 629,053 - MMP_RS03345 0.36 -0.5 629,063 - MMP_RS03345 0.37 +4.0 629,064 + MMP_RS03345 0.37 +0.7 629,065 - MMP_RS03345 0.37 +1.1 629,065 - MMP_RS03345 0.37 +1.6 629,065 - MMP_RS03345 0.37 -0.7 629,141 - MMP_RS03345 0.43 +0.2 629,141 - MMP_RS03345 0.43 +0.2 629,142 + MMP_RS03345 0.43 -0.4 629,143 - MMP_RS03345 0.43 +1.4 629,143 - MMP_RS03345 0.43 +0.1 629,144 + MMP_RS03345 0.43 -0.1 629,144 + MMP_RS03345 0.43 +0.1 629,366 + MMP_RS03345 0.61 -0.4 629,368 + MMP_RS03345 0.61 -0.5 629,557 - MMP_RS03345 0.77 +1.2 629,569 + MMP_RS03345 0.78 +0.0 629,608 - MMP_RS03345 0.81 +0.5 629,674 - MMP_RS03345 0.86 +1.2 629,754 - -0.2 629,760 - +0.1 629,768 - +1.1 629,790 + +1.5 629,801 - +1.7 629,802 + +0.9 629,802 + -0.4 629,804 + +1.0 629,805 - +1.8 629,845 - +0.8 629,883 - +0.3 629,952 + MMP_RS03350 0.13 -0.0 630,202 + MMP_RS03350 0.59 +1.9 630,203 - MMP_RS03350 0.59 +0.0 630,322 + MMP_RS03350 0.81 +1.0 630,407 - -0.2 630,412 - -0.1 630,413 + +0.4 630,483 - -2.0 630,575 - -0.1 630,599 + -1.7 630,599 + -0.7 630,628 - +1.6 630,628 - -0.2 630,631 + +0.8 630,713 + -0.6 630,730 + +0.9 630,794 + MMP_RS03355 0.12 -0.3
Or see this region's nucleotide sequence