Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02930 and MMP_RS02935 are separated by 43 nucleotides MMP_RS02935 and MMP_RS02940 overlap by 4 nucleotides MMP_RS02940 and MMP_RS02945 are separated by 1 nucleotides MMP_RS02945 and MMP_RS02950 are separated by 9 nucleotides MMP_RS02950 and MMP_RS02955 are separated by 118 nucleotides
MMP_RS02930: MMP_RS02930 - class I SAM-dependent methyltransferase, at 557,679 to 558,281
_RS02930
MMP_RS02935: MMP_RS02935 - A24 family peptidase, at 558,325 to 559,017
_RS02935
MMP_RS02940: MMP_RS02940 - TatD family hydrolase, at 559,014 to 559,856
_RS02940
MMP_RS02945: MMP_RS02945 - UPF0146 family protein, at 559,858 to 560,271
_RS02945
MMP_RS02950: MMP_RS02950 - hypothetical protein, at 560,281 to 560,577
_RS02950
MMP_RS02955: MMP_RS02955 - DJ-1/PfpI family protein, at 560,696 to 561,211
_RS02955
Position (kb) 559
560 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 558.073 kb on - strand, within MMP_RS02930 at 558.192 kb on - strand, within MMP_RS02930 at 558.227 kb on - strand at 558.290 kb on - strand at 558.301 kb on - strand at 558.302 kb on + strand at 558.334 kb on - strand at 558.334 kb on - strand at 558.460 kb on + strand, within MMP_RS02935 at 558.616 kb on - strand, within MMP_RS02935 at 558.649 kb on - strand, within MMP_RS02935 at 558.962 kb on + strand at 558.962 kb on + strand at 558.965 kb on - strand at 558.966 kb on + strand at 558.966 kb on + strand at 558.969 kb on + strand at 558.992 kb on - strand at 559.221 kb on - strand, within MMP_RS02940 at 559.272 kb on - strand, within MMP_RS02940 at 559.324 kb on + strand, within MMP_RS02940 at 559.426 kb on - strand, within MMP_RS02940 at 559.554 kb on - strand, within MMP_RS02940 at 559.555 kb on + strand, within MMP_RS02940 at 559.555 kb on + strand, within MMP_RS02940 at 559.562 kb on + strand, within MMP_RS02940 at 559.735 kb on + strand, within MMP_RS02940 at 559.877 kb on - strand at 560.125 kb on - strand at 560.131 kb on - strand at 560.250 kb on - strand at 560.252 kb on - strand at 560.253 kb on + strand at 560.282 kb on - strand at 560.604 kb on - strand at 560.616 kb on - strand at 560.627 kb on - strand at 560.636 kb on - strand at 560.647 kb on + strand at 560.651 kb on - strand at 560.659 kb on + strand at 560.659 kb on + strand at 560.659 kb on + strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.707 kb on + strand at 560.757 kb on - strand, within MMP_RS02955 at 560.764 kb on + strand, within MMP_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 558,073 - MMP_RS02930 0.65 -0.8 558,192 - MMP_RS02930 0.85 -3.8 558,227 - +0.0 558,290 - +0.8 558,301 - +0.4 558,302 + -0.5 558,334 - +0.6 558,334 - -2.5 558,460 + MMP_RS02935 0.19 -0.4 558,616 - MMP_RS02935 0.42 +0.5 558,649 - MMP_RS02935 0.47 +2.2 558,962 + +0.8 558,962 + -0.8 558,965 - +1.5 558,966 + -0.0 558,966 + +0.6 558,969 + +1.0 558,992 - -0.3 559,221 - MMP_RS02940 0.25 -0.3 559,272 - MMP_RS02940 0.31 -0.2 559,324 + MMP_RS02940 0.37 -1.1 559,426 - MMP_RS02940 0.49 -1.0 559,554 - MMP_RS02940 0.64 -0.7 559,555 + MMP_RS02940 0.64 -0.4 559,555 + MMP_RS02940 0.64 -1.0 559,562 + MMP_RS02940 0.65 -0.6 559,735 + MMP_RS02940 0.86 -0.0 559,877 - -0.3 560,125 - -2.0 560,131 - -0.3 560,250 - +0.5 560,252 - -2.4 560,253 + -1.7 560,282 - +0.1 560,604 - +0.2 560,616 - +0.7 560,627 - -0.4 560,636 - +2.9 560,647 + +3.0 560,651 - +0.7 560,659 + +0.8 560,659 + +0.1 560,659 + -0.8 560,660 - -0.9 560,660 - +1.0 560,660 - +1.2 560,660 - -1.5 560,661 + +0.3 560,661 + -1.1 560,661 + +1.2 560,661 + -0.9 560,661 + -0.0 560,661 + -0.6 560,707 + +0.3 560,757 - MMP_RS02955 0.12 +1.8 560,764 + MMP_RS02955 0.13 -0.3
Or see this region's nucleotide sequence