Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02885 and MMP_RS02890 are separated by 216 nucleotides MMP_RS02890 and MMP_RS02895 are separated by 61 nucleotides
MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601
_RS02885
MMP_RS02890: MMP_RS02890 - TIGR00296 family protein, at 550,818 to 551,429
_RS02890
MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786
_RS02895
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 549.849 kb on + strand, within MMP_RS02885 at 549.853 kb on + strand, within MMP_RS02885 at 549.864 kb on - strand, within MMP_RS02885 at 549.871 kb on - strand, within MMP_RS02885 at 549.872 kb on + strand, within MMP_RS02885 at 549.872 kb on + strand, within MMP_RS02885 at 549.935 kb on - strand, within MMP_RS02885 at 550.018 kb on - strand, within MMP_RS02885 at 550.091 kb on + strand, within MMP_RS02885 at 550.115 kb on + strand, within MMP_RS02885 at 550.153 kb on - strand, within MMP_RS02885 at 550.422 kb on + strand at 550.585 kb on - strand at 550.651 kb on - strand at 550.713 kb on + strand at 550.740 kb on + strand at 550.858 kb on + strand at 550.874 kb on + strand at 550.874 kb on + strand at 550.946 kb on + strand, within MMP_RS02890 at 550.991 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.114 kb on + strand, within MMP_RS02890 at 551.170 kb on + strand, within MMP_RS02890 at 551.204 kb on - strand, within MMP_RS02890 at 551.237 kb on + strand, within MMP_RS02890 at 551.261 kb on - strand, within MMP_RS02890 at 551.343 kb on + strand, within MMP_RS02890 at 551.398 kb on - strand at 551.415 kb on - strand at 551.466 kb on + strand at 551.498 kb on - strand at 551.520 kb on - strand at 551.646 kb on + strand, within MMP_RS02895 at 552.050 kb on + strand, within MMP_RS02895 at 552.092 kb on - strand, within MMP_RS02895 at 552.113 kb on + strand, within MMP_RS02895 at 552.131 kb on + strand, within MMP_RS02895 at 552.187 kb on + strand, within MMP_RS02895 at 552.189 kb on + strand, within MMP_RS02895 at 552.300 kb on - strand, within MMP_RS02895 at 552.336 kb on + strand, within MMP_RS02895 at 552.422 kb on - strand, within MMP_RS02895 at 552.425 kb on + strand, within MMP_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 549,849 + MMP_RS02885 0.59 +1.1 549,853 + MMP_RS02885 0.60 +2.8 549,864 - MMP_RS02885 0.60 +1.6 549,871 - MMP_RS02885 0.61 +1.4 549,872 + MMP_RS02885 0.61 -0.2 549,872 + MMP_RS02885 0.61 +2.5 549,935 - MMP_RS02885 0.64 +2.4 550,018 - MMP_RS02885 0.68 +0.2 550,091 + MMP_RS02885 0.72 +3.0 550,115 + MMP_RS02885 0.74 +1.7 550,153 - MMP_RS02885 0.76 +1.1 550,422 + +2.0 550,585 - +2.6 550,651 - -0.0 550,713 + -0.6 550,740 + -0.5 550,858 + +2.2 550,874 + +0.4 550,874 + -0.4 550,946 + MMP_RS02890 0.21 +1.0 550,991 - MMP_RS02890 0.28 +0.6 551,113 - MMP_RS02890 0.48 +2.1 551,113 - MMP_RS02890 0.48 -3.1 551,114 + MMP_RS02890 0.48 +0.7 551,170 + MMP_RS02890 0.58 +0.7 551,204 - MMP_RS02890 0.63 +0.9 551,237 + MMP_RS02890 0.68 +1.5 551,261 - MMP_RS02890 0.72 +0.9 551,343 + MMP_RS02890 0.86 +0.9 551,398 - -1.5 551,415 - -0.3 551,466 + +1.1 551,498 - +1.6 551,520 - +1.4 551,646 + MMP_RS02895 0.12 +1.4 552,050 + MMP_RS02895 0.43 -0.3 552,092 - MMP_RS02895 0.46 +1.0 552,113 + MMP_RS02895 0.48 -1.0 552,131 + MMP_RS02895 0.49 +1.1 552,187 + MMP_RS02895 0.54 +3.1 552,189 + MMP_RS02895 0.54 +1.9 552,300 - MMP_RS02895 0.62 -0.3 552,336 + MMP_RS02895 0.65 +0.8 552,422 - MMP_RS02895 0.72 +1.2 552,425 + MMP_RS02895 0.72 +0.9
Or see this region's nucleotide sequence