Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02720 and MMP_RS02725 are separated by 10 nucleotides MMP_RS02725 and MMP_RS02730 are separated by 123 nucleotides MMP_RS02730 and MMP_RS02735 are separated by 27 nucleotides MMP_RS02735 and MMP_RS02740 are separated by 80 nucleotides
MMP_RS02720: MMP_RS02720 - molybdate ABC transporter substrate-binding protein, at 520,134 to 520,910
_RS02720
MMP_RS02725: MMP_RS02725 - molybdate ABC transporter permease subunit, at 520,921 to 521,586
_RS02725
MMP_RS02730: MMP_RS02730 - ModD protein, at 521,710 to 522,561
_RS02730
MMP_RS02735: MMP_RS02735 - MBL fold metallo-hydrolase, at 522,589 to 523,119
_RS02735
MMP_RS02740: MMP_RS02740 - hypothetical protein, at 523,200 to 523,469
_RS02740
Position (kb) 521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 520.711 kb on - strand, within MMP_RS02720 at 520.852 kb on + strand at 520.950 kb on - strand at 520.971 kb on + strand at 521.004 kb on - strand, within MMP_RS02725 at 521.004 kb on - strand, within MMP_RS02725 at 521.063 kb on - strand, within MMP_RS02725 at 521.064 kb on + strand, within MMP_RS02725 at 521.096 kb on - strand, within MMP_RS02725 at 521.105 kb on - strand, within MMP_RS02725 at 521.291 kb on + strand, within MMP_RS02725 at 521.369 kb on - strand, within MMP_RS02725 at 521.377 kb on + strand, within MMP_RS02725 at 521.463 kb on - strand, within MMP_RS02725 at 521.511 kb on + strand, within MMP_RS02725 at 521.524 kb on + strand at 521.546 kb on - strand at 521.546 kb on - strand at 521.547 kb on + strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.549 kb on + strand at 521.549 kb on + strand at 521.549 kb on + strand at 521.553 kb on + strand at 521.572 kb on + strand at 521.621 kb on + strand at 521.621 kb on + strand at 521.621 kb on + strand at 521.623 kb on + strand at 521.635 kb on - strand at 521.635 kb on - strand at 521.636 kb on + strand at 521.636 kb on + strand at 521.636 kb on + strand at 521.672 kb on - strand at 521.675 kb on - strand at 521.676 kb on + strand at 521.680 kb on + strand at 521.709 kb on - strand at 521.710 kb on + strand at 521.710 kb on + strand at 521.719 kb on - strand at 521.719 kb on - strand at 521.825 kb on + strand, within MMP_RS02730 at 521.876 kb on - strand, within MMP_RS02730 at 521.876 kb on - strand, within MMP_RS02730 at 521.877 kb on + strand, within MMP_RS02730 at 522.134 kb on - strand, within MMP_RS02730 at 522.143 kb on - strand, within MMP_RS02730 at 522.189 kb on - strand, within MMP_RS02730 at 522.189 kb on - strand, within MMP_RS02730 at 522.189 kb on - strand, within MMP_RS02730 at 522.190 kb on + strand, within MMP_RS02730 at 522.190 kb on + strand, within MMP_RS02730 at 522.197 kb on - strand, within MMP_RS02730 at 522.461 kb on - strand, within MMP_RS02730 at 522.469 kb on - strand, within MMP_RS02730 at 522.542 kb on - strand at 522.563 kb on - strand at 522.583 kb on - strand at 522.586 kb on + strand at 522.719 kb on + strand, within MMP_RS02735 at 522.759 kb on + strand, within MMP_RS02735 at 522.759 kb on + strand, within MMP_RS02735 at 522.811 kb on + strand, within MMP_RS02735 at 522.833 kb on + strand, within MMP_RS02735 at 522.922 kb on - strand, within MMP_RS02735 at 522.931 kb on - strand, within MMP_RS02735 at 523.013 kb on + strand, within MMP_RS02735 at 523.174 kb on + strand at 523.186 kb on - strand at 523.191 kb on - strand at 523.299 kb on - strand, within MMP_RS02740 at 523.368 kb on - strand, within MMP_RS02740 at 523.397 kb on - strand, within MMP_RS02740 at 523.414 kb on + strand, within MMP_RS02740 at 523.515 kb on - strand at 523.515 kb on - strand at 523.517 kb on - strand at 523.520 kb on - strand at 523.521 kb on + strand at 523.523 kb on + strand at 523.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 520,711 - MMP_RS02720 0.74 +0.6 520,852 + +1.6 520,950 - +0.3 520,971 + +2.5 521,004 - MMP_RS02725 0.12 +0.5 521,004 - MMP_RS02725 0.12 -0.3 521,063 - MMP_RS02725 0.21 -0.0 521,064 + MMP_RS02725 0.21 -0.2 521,096 - MMP_RS02725 0.26 -0.6 521,105 - MMP_RS02725 0.28 +2.2 521,291 + MMP_RS02725 0.56 +1.8 521,369 - MMP_RS02725 0.67 +0.2 521,377 + MMP_RS02725 0.68 +1.5 521,463 - MMP_RS02725 0.81 +0.8 521,511 + MMP_RS02725 0.89 -0.3 521,524 + +0.3 521,546 - +0.9 521,546 - +0.7 521,547 + -1.3 521,548 - +0.4 521,548 - -1.2 521,548 - +0.7 521,548 - +0.3 521,548 - -1.2 521,549 + -0.5 521,549 + +0.6 521,549 + -0.8 521,553 + -0.7 521,572 + +0.8 521,621 + -3.0 521,621 + +1.6 521,621 + -1.5 521,623 + -0.3 521,635 - -1.8 521,635 - +1.6 521,636 + -0.1 521,636 + +1.1 521,636 + +0.9 521,672 - -0.2 521,675 - +0.0 521,676 + +0.4 521,680 + -1.0 521,709 - +0.7 521,710 + +1.4 521,710 + -3.5 521,719 - +0.3 521,719 - -1.3 521,825 + MMP_RS02730 0.13 +0.5 521,876 - MMP_RS02730 0.19 -0.8 521,876 - MMP_RS02730 0.19 -1.3 521,877 + MMP_RS02730 0.20 -0.7 522,134 - MMP_RS02730 0.50 -0.1 522,143 - MMP_RS02730 0.51 -0.4 522,189 - MMP_RS02730 0.56 +1.6 522,189 - MMP_RS02730 0.56 -1.5 522,189 - MMP_RS02730 0.56 -0.1 522,190 + MMP_RS02730 0.56 +1.8 522,190 + MMP_RS02730 0.56 +0.9 522,197 - MMP_RS02730 0.57 -1.8 522,461 - MMP_RS02730 0.88 -0.8 522,469 - MMP_RS02730 0.89 -0.5 522,542 - +0.9 522,563 - +0.7 522,583 - -1.4 522,586 + +0.4 522,719 + MMP_RS02735 0.24 -0.2 522,759 + MMP_RS02735 0.32 +1.3 522,759 + MMP_RS02735 0.32 +0.9 522,811 + MMP_RS02735 0.42 -2.2 522,833 + MMP_RS02735 0.46 -1.1 522,922 - MMP_RS02735 0.63 -0.6 522,931 - MMP_RS02735 0.64 +1.8 523,013 + MMP_RS02735 0.80 -1.7 523,174 + +1.7 523,186 - -1.0 523,191 - +0.5 523,299 - MMP_RS02740 0.37 +0.3 523,368 - MMP_RS02740 0.62 -0.8 523,397 - MMP_RS02740 0.73 -1.2 523,414 + MMP_RS02740 0.79 -1.4 523,515 - +0.3 523,515 - -0.2 523,517 - -0.9 523,520 - +0.8 523,521 + +1.2 523,523 + +0.4 523,525 - +0.8
Or see this region's nucleotide sequence