Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02445 and MMP_RS02450 are separated by 273 nucleotides MMP_RS02450 and MMP_RS02455 are separated by 12 nucleotides MMP_RS02455 and MMP_RS02460 are separated by 165 nucleotides
MMP_RS02445: MMP_RS02445 - putative DNA binding domain-containing protein, at 456,701 to 458,044
_RS02445
MMP_RS02450: MMP_RS02450 - hypothetical protein, at 458,318 to 458,512
_RS02450
MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142
_RS02455
MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367
_RS02460
Position (kb) 458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 457.318 kb on - strand, within MMP_RS02445 at 457.319 kb on + strand, within MMP_RS02445 at 457.334 kb on - strand, within MMP_RS02445 at 457.450 kb on + strand, within MMP_RS02445 at 457.519 kb on - strand, within MMP_RS02445 at 457.560 kb on - strand, within MMP_RS02445 at 457.561 kb on + strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.605 kb on - strand, within MMP_RS02445 at 457.606 kb on + strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.622 kb on - strand, within MMP_RS02445 at 457.675 kb on + strand, within MMP_RS02445 at 457.716 kb on - strand, within MMP_RS02445 at 457.879 kb on + strand, within MMP_RS02445 at 457.919 kb on + strand at 457.932 kb on - strand at 457.942 kb on - strand at 457.943 kb on + strand at 457.996 kb on + strand at 457.996 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.054 kb on + strand at 458.054 kb on + strand at 458.064 kb on - strand at 458.087 kb on + strand at 458.098 kb on + strand at 458.136 kb on + strand at 458.136 kb on + strand at 458.214 kb on - strand at 458.231 kb on + strand at 458.250 kb on + strand at 458.308 kb on - strand at 458.347 kb on + strand, within MMP_RS02450 at 458.361 kb on - strand, within MMP_RS02450 at 458.371 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.403 kb on + strand, within MMP_RS02450 at 458.468 kb on + strand, within MMP_RS02450 at 458.532 kb on + strand at 458.628 kb on - strand, within MMP_RS02455 at 458.629 kb on + strand, within MMP_RS02455 at 458.630 kb on - strand, within MMP_RS02455 at 458.760 kb on + strand, within MMP_RS02455 at 458.783 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.960 kb on + strand, within MMP_RS02455 at 458.963 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.996 kb on + strand, within MMP_RS02455 at 459.136 kb on - strand at 459.212 kb on + strand at 459.241 kb on - strand at 459.255 kb on - strand at 459.288 kb on - strand at 459.307 kb on + strand at 459.321 kb on - strand at 459.344 kb on - strand at 459.345 kb on + strand at 459.378 kb on + strand at 459.409 kb on - strand at 459.409 kb on - strand at 459.409 kb on - strand at 459.410 kb on + strand at 459.411 kb on - strand at 459.446 kb on + strand at 459.448 kb on - strand at 459.448 kb on - strand at 459.448 kb on - strand at 459.449 kb on + strand at 459.451 kb on - strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.453 kb on - strand at 459.453 kb on - strand at 459.454 kb on + strand at 459.457 kb on - strand at 459.457 kb on - strand at 459.457 kb on - strand at 459.458 kb on + strand at 459.482 kb on - strand at 459.482 kb on - strand at 459.482 kb on - strand at 459.502 kb on - strand at 459.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 457,318 - MMP_RS02445 0.46 +0.6 457,319 + MMP_RS02445 0.46 +1.1 457,334 - MMP_RS02445 0.47 -0.4 457,450 + MMP_RS02445 0.56 -1.3 457,519 - MMP_RS02445 0.61 -0.7 457,560 - MMP_RS02445 0.64 -0.8 457,561 + MMP_RS02445 0.64 -0.2 457,564 - MMP_RS02445 0.64 +0.8 457,564 - MMP_RS02445 0.64 +1.4 457,564 - MMP_RS02445 0.64 +1.3 457,564 - MMP_RS02445 0.64 +1.6 457,564 - MMP_RS02445 0.64 -0.5 457,565 + MMP_RS02445 0.64 -0.4 457,565 + MMP_RS02445 0.64 -0.8 457,566 - MMP_RS02445 0.64 -0.1 457,566 - MMP_RS02445 0.64 +0.7 457,566 - MMP_RS02445 0.64 -2.3 457,567 + MMP_RS02445 0.64 +1.0 457,567 + MMP_RS02445 0.64 -0.3 457,605 - MMP_RS02445 0.67 -1.5 457,606 + MMP_RS02445 0.67 +1.2 457,611 - MMP_RS02445 0.68 -0.7 457,611 - MMP_RS02445 0.68 +0.2 457,622 - MMP_RS02445 0.69 -0.4 457,675 + MMP_RS02445 0.72 +2.1 457,716 - MMP_RS02445 0.76 +0.4 457,879 + MMP_RS02445 0.88 +0.7 457,919 + -0.7 457,932 - -2.0 457,942 - +1.0 457,943 + -0.4 457,996 + -0.8 457,996 + +1.0 458,048 + -2.0 458,048 + -0.4 458,048 + +0.0 458,054 + +2.0 458,054 + -0.2 458,064 - +1.5 458,087 + -1.8 458,098 + -2.6 458,136 + -0.1 458,136 + -0.8 458,214 - -2.5 458,231 + +0.3 458,250 + -0.2 458,308 - +0.4 458,347 + MMP_RS02450 0.15 +2.1 458,361 - MMP_RS02450 0.22 +0.2 458,371 - MMP_RS02450 0.27 +1.4 458,392 - MMP_RS02450 0.38 -0.5 458,392 - MMP_RS02450 0.38 -1.0 458,398 + MMP_RS02450 0.41 -0.1 458,398 + MMP_RS02450 0.41 -4.4 458,403 + MMP_RS02450 0.44 +0.0 458,468 + MMP_RS02450 0.77 +2.0 458,532 + +1.3 458,628 - MMP_RS02455 0.17 +2.2 458,629 + MMP_RS02455 0.17 -0.4 458,630 - MMP_RS02455 0.17 +1.5 458,760 + MMP_RS02455 0.38 -0.1 458,783 - MMP_RS02455 0.42 -1.1 458,787 - MMP_RS02455 0.42 +0.5 458,787 - MMP_RS02455 0.42 -0.1 458,960 + MMP_RS02455 0.70 +0.3 458,963 - MMP_RS02455 0.71 -0.3 458,974 - MMP_RS02455 0.73 +0.5 458,974 - MMP_RS02455 0.73 +0.8 458,996 + MMP_RS02455 0.76 +2.7 459,136 - +1.6 459,212 + +1.9 459,241 - +0.4 459,255 - +0.2 459,288 - -0.8 459,307 + +0.0 459,321 - +1.6 459,344 - +1.5 459,345 + +0.8 459,378 + -0.6 459,409 - +3.9 459,409 - +0.8 459,409 - +0.1 459,410 + -0.1 459,411 - +0.9 459,446 + -2.3 459,448 - -0.9 459,448 - +1.0 459,448 - +1.4 459,449 + +0.5 459,451 - +0.9 459,452 + +1.3 459,452 + -0.4 459,452 + +0.5 459,452 + +0.1 459,453 - +0.8 459,453 - +0.4 459,454 + -3.6 459,457 - +1.7 459,457 - +2.2 459,457 - +0.9 459,458 + +1.7 459,482 - +1.5 459,482 - +1.7 459,482 - +0.6 459,502 - -1.1 459,502 - -1.0
Or see this region's nucleotide sequence