Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02430 and MMP_RS02435 are separated by 71 nucleotides MMP_RS02435 and MMP_RS02440 are separated by 345 nucleotides
MMP_RS02430: MMP_RS02430 - hypothetical protein, at 452,313 to 453,959
_RS02430
MMP_RS02435: MMP_RS02435 - tRNA-Ser, at 454,031 to 454,115
_RS02435
MMP_RS02440: MMP_RS02440 - hypothetical protein, at 454,461 to 454,838
_RS02440
Position (kb) 454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 453.463 kb on - strand, within MMP_RS02430 at 453.633 kb on + strand, within MMP_RS02430 at 453.670 kb on - strand, within MMP_RS02430 at 453.671 kb on + strand, within MMP_RS02430 at 453.676 kb on - strand, within MMP_RS02430 at 453.677 kb on + strand, within MMP_RS02430 at 453.693 kb on - strand, within MMP_RS02430 at 453.693 kb on - strand, within MMP_RS02430 at 453.722 kb on - strand, within MMP_RS02430 at 453.734 kb on - strand, within MMP_RS02430 at 453.735 kb on + strand, within MMP_RS02430 at 453.745 kb on - strand, within MMP_RS02430 at 453.858 kb on + strand at 453.928 kb on - strand at 453.928 kb on - strand at 453.928 kb on - strand at 453.931 kb on - strand at 453.965 kb on + strand at 453.970 kb on - strand at 453.971 kb on + strand at 454.170 kb on - strand at 454.185 kb on - strand at 454.196 kb on - strand at 454.312 kb on + strand at 454.312 kb on + strand at 454.314 kb on - strand at 454.315 kb on + strand at 454.504 kb on + strand, within MMP_RS02440 at 454.506 kb on + strand, within MMP_RS02440 at 454.506 kb on + strand, within MMP_RS02440 at 454.515 kb on - strand, within MMP_RS02440 at 454.516 kb on + strand, within MMP_RS02440 at 454.573 kb on + strand, within MMP_RS02440 at 454.624 kb on - strand, within MMP_RS02440 at 454.624 kb on - strand, within MMP_RS02440 at 454.841 kb on + strand at 454.862 kb on - strand at 454.944 kb on - strand at 454.944 kb on - strand at 454.969 kb on + strand at 454.988 kb on + strand at 454.989 kb on - strand at 455.021 kb on + strand at 455.039 kb on + strand at 455.039 kb on + strand at 455.060 kb on - strand at 455.061 kb on + strand at 455.061 kb on + strand at 455.099 kb on + strand at 455.109 kb on - strand at 455.135 kb on - strand at 455.136 kb on + strand at 455.178 kb on - strand at 455.179 kb on + strand at 455.215 kb on - strand at 455.239 kb on - strand at 455.262 kb on + strand at 455.287 kb on - strand at 455.335 kb on - strand at 455.361 kb on - strand at 455.362 kb on + strand at 455.373 kb on + strand at 455.373 kb on + strand at 455.381 kb on - strand at 455.382 kb on + strand at 455.386 kb on - strand at 455.423 kb on - strand at 455.478 kb on - strand at 455.479 kb on + strand at 455.553 kb on - strand at 455.557 kb on - strand at 455.558 kb on + strand at 455.616 kb on + strand at 455.636 kb on - strand at 455.652 kb on - strand at 455.664 kb on - strand at 455.688 kb on - strand at 455.688 kb on - strand at 455.693 kb on - strand at 455.698 kb on - strand at 455.803 kb on - strand at 455.804 kb on + strand at 455.813 kb on - strand at 455.813 kb on - strand at 455.814 kb on + strand at 455.817 kb on - strand at 455.817 kb on - strand at 455.817 kb on - strand at 455.818 kb on + strand at 455.822 kb on - strand at 455.822 kb on - strand at 455.822 kb on - strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.827 kb on - strand at 455.835 kb on - strand at 455.835 kb on - strand at 455.836 kb on + strand at 455.836 kb on + strand at 455.836 kb on + strand at 455.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 453,463 - MMP_RS02430 0.70 -0.1 453,633 + MMP_RS02430 0.80 +1.6 453,670 - MMP_RS02430 0.82 +0.8 453,671 + MMP_RS02430 0.82 +0.0 453,676 - MMP_RS02430 0.83 +0.3 453,677 + MMP_RS02430 0.83 +0.8 453,693 - MMP_RS02430 0.84 +1.6 453,693 - MMP_RS02430 0.84 +0.5 453,722 - MMP_RS02430 0.86 -0.5 453,734 - MMP_RS02430 0.86 +2.5 453,735 + MMP_RS02430 0.86 +0.4 453,745 - MMP_RS02430 0.87 +1.7 453,858 + -1.2 453,928 - +0.4 453,928 - -1.0 453,928 - +0.3 453,931 - +0.2 453,965 + +1.3 453,970 - +0.0 453,971 + +1.1 454,170 - +0.2 454,185 - -0.7 454,196 - +0.7 454,312 + +0.6 454,312 + +0.9 454,314 - +1.5 454,315 + +0.3 454,504 + MMP_RS02440 0.11 +0.8 454,506 + MMP_RS02440 0.12 +0.5 454,506 + MMP_RS02440 0.12 +0.9 454,515 - MMP_RS02440 0.14 -1.2 454,516 + MMP_RS02440 0.15 +2.3 454,573 + MMP_RS02440 0.30 +2.6 454,624 - MMP_RS02440 0.43 -2.8 454,624 - MMP_RS02440 0.43 +1.2 454,841 + +1.1 454,862 - +1.6 454,944 - -0.5 454,944 - +0.8 454,969 + +0.3 454,988 + +0.2 454,989 - -0.5 455,021 + +1.8 455,039 + -0.5 455,039 + -0.6 455,060 - -1.8 455,061 + -0.9 455,061 + +0.1 455,099 + -1.7 455,109 - -0.8 455,135 - +2.1 455,136 + +0.1 455,178 - -3.4 455,179 + +1.5 455,215 - -0.6 455,239 - +0.6 455,262 + +0.4 455,287 - -0.3 455,335 - -0.0 455,361 - +1.2 455,362 + -0.8 455,373 + -3.5 455,373 + +2.3 455,381 - +1.1 455,382 + +0.2 455,386 - -1.5 455,423 - -0.7 455,478 - -0.3 455,479 + +0.7 455,553 - +1.4 455,557 - -0.9 455,558 + +0.6 455,616 + +0.5 455,636 - -0.1 455,652 - +3.0 455,664 - +0.2 455,688 - +1.0 455,688 - -2.2 455,693 - -0.1 455,698 - -1.3 455,803 - +0.4 455,804 + -0.8 455,813 - -1.0 455,813 - +3.1 455,814 + +0.1 455,817 - +0.7 455,817 - -0.7 455,817 - -2.1 455,818 + +0.2 455,822 - +0.2 455,822 - -0.3 455,822 - +0.6 455,823 + +1.6 455,823 + -0.5 455,825 + -0.4 455,825 + -0.9 455,825 + +1.1 455,827 - +0.5 455,835 - -1.7 455,835 - -0.3 455,836 + +1.0 455,836 + +0.5 455,836 + -0.6 455,836 + +0.6
Or see this region's nucleotide sequence