Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02400 and MMP_RS02405 are separated by 127 nucleotides MMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides
MMP_RS02400: MMP_RS02400 - site-2 protease family protein, at 445,925 to 446,938
_RS02400
MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587
_RS02405
MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449
_RS02410
MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101
_RS02415
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 446.775 kb on - strand, within MMP_RS02400 at 446.776 kb on + strand, within MMP_RS02400 at 446.824 kb on + strand, within MMP_RS02400 at 446.877 kb on + strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.966 kb on + strand at 446.966 kb on + strand at 446.968 kb on + strand at 446.968 kb on + strand at 446.988 kb on + strand at 447.006 kb on - strand at 447.007 kb on + strand at 447.007 kb on + strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.020 kb on + strand at 447.050 kb on - strand at 447.051 kb on + strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.366 kb on - strand, within MMP_RS02405 at 447.366 kb on - strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.369 kb on + strand, within MMP_RS02405 at 447.415 kb on + strand, within MMP_RS02405 at 447.472 kb on - strand, within MMP_RS02405 at 447.601 kb on - strand at 447.601 kb on - strand at 447.642 kb on + strand at 447.738 kb on + strand at 447.837 kb on - strand, within MMP_RS02410 at 448.088 kb on + strand, within MMP_RS02410 at 448.362 kb on - strand, within MMP_RS02410 at 448.392 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.947 kb on + strand, within MMP_RS02415 at 448.968 kb on + strand, within MMP_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 446,775 - MMP_RS02400 0.84 -2.2 446,776 + MMP_RS02400 0.84 +1.4 446,824 + MMP_RS02400 0.89 +1.3 446,877 + -0.4 446,962 - -2.3 446,962 - -0.5 446,962 - -1.0 446,962 - +1.6 446,963 + -0.1 446,963 + -1.6 446,963 + +0.7 446,965 - -0.6 446,965 - -0.5 446,965 - +0.9 446,966 + -0.4 446,966 + +1.0 446,968 + -0.5 446,968 + -0.9 446,988 + +1.3 447,006 - -1.3 447,007 + +1.6 447,007 + -0.4 447,010 - +0.8 447,010 - +0.1 447,010 - +0.2 447,010 - -0.1 447,020 + -0.1 447,050 - -0.4 447,051 + -0.9 447,085 - +2.1 447,085 - +1.6 447,085 - +1.9 447,366 - MMP_RS02405 0.57 -2.8 447,366 - MMP_RS02405 0.57 +0.0 447,367 + MMP_RS02405 0.58 -0.3 447,367 + MMP_RS02405 0.58 -1.5 447,369 + MMP_RS02405 0.58 -3.2 447,415 + MMP_RS02405 0.67 +1.8 447,472 - MMP_RS02405 0.78 +1.8 447,601 - -0.5 447,601 - -1.4 447,642 + -0.0 447,738 + -2.2 447,837 - MMP_RS02410 0.18 +0.4 448,088 + MMP_RS02410 0.52 +0.6 448,362 - MMP_RS02410 0.88 -0.6 448,392 - +0.6 448,483 - -0.6 448,483 - -0.6 448,483 - -0.8 448,947 + MMP_RS02415 0.72 +1.6 448,968 + MMP_RS02415 0.76 +0.3
Or see this region's nucleotide sequence