Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01770 and MMP_RS01775 are separated by 341 nucleotides MMP_RS01775 and MMP_RS01780 are separated by 160 nucleotides MMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides
MMP_RS01770: MMP_RS01770 - ATP-dependent endonuclease, at 328,459 to 330,339
_RS01770
MMP_RS01775: MMP_RS01775 - TIGR00297 family protein, at 330,681 to 331,394
_RS01775
MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259
_RS01780
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
Position (kb) 330
331
332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 329.863 kb on + strand, within MMP_RS01770 at 329.866 kb on - strand, within MMP_RS01770 at 329.867 kb on + strand, within MMP_RS01770 at 329.915 kb on + strand, within MMP_RS01770 at 329.915 kb on + strand, within MMP_RS01770 at 329.915 kb on + strand, within MMP_RS01770 at 329.931 kb on - strand, within MMP_RS01770 at 329.946 kb on - strand, within MMP_RS01770 at 329.946 kb on - strand, within MMP_RS01770 at 329.950 kb on - strand, within MMP_RS01770 at 329.951 kb on + strand, within MMP_RS01770 at 329.952 kb on - strand, within MMP_RS01770 at 329.952 kb on - strand, within MMP_RS01770 at 329.952 kb on - strand, within MMP_RS01770 at 329.953 kb on + strand, within MMP_RS01770 at 329.953 kb on + strand, within MMP_RS01770 at 330.035 kb on - strand, within MMP_RS01770 at 330.036 kb on + strand, within MMP_RS01770 at 330.119 kb on - strand, within MMP_RS01770 at 330.120 kb on + strand, within MMP_RS01770 at 330.154 kb on - strand at 330.154 kb on - strand at 330.158 kb on - strand at 330.158 kb on - strand at 330.159 kb on + strand at 330.162 kb on + strand at 330.199 kb on - strand at 330.200 kb on + strand at 330.204 kb on - strand at 330.245 kb on - strand at 330.246 kb on + strand at 330.246 kb on + strand at 330.271 kb on - strand at 330.272 kb on + strand at 330.279 kb on - strand at 330.300 kb on + strand at 330.337 kb on - strand at 330.477 kb on - strand at 330.493 kb on + strand at 330.496 kb on - strand at 330.506 kb on - strand at 330.527 kb on - strand at 330.538 kb on - strand at 330.598 kb on + strand at 330.599 kb on - strand at 330.603 kb on + strand at 330.604 kb on - strand at 330.604 kb on - strand at 330.628 kb on + strand at 330.756 kb on - strand, within MMP_RS01775 at 330.967 kb on - strand, within MMP_RS01775 at 331.348 kb on - strand at 331.372 kb on - strand at 331.388 kb on + strand at 331.388 kb on + strand at 331.439 kb on - strand at 331.439 kb on - strand at 331.463 kb on + strand at 331.471 kb on + strand at 331.499 kb on + strand at 331.503 kb on - strand at 331.504 kb on + strand at 331.510 kb on + strand at 331.806 kb on - strand, within MMP_RS01780 at 331.831 kb on + strand, within MMP_RS01780 at 331.884 kb on + strand, within MMP_RS01780 at 332.120 kb on - strand, within MMP_RS01780 at 332.146 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.160 kb on + strand, within MMP_RS01780 at 332.228 kb on - strand at 332.245 kb on + strand at 332.258 kb on + strand at 332.294 kb on + strand at 332.296 kb on - strand at 332.336 kb on + strand at 332.337 kb on - strand at 332.372 kb on - strand, within MMP_RS01785
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 329,863 + MMP_RS01770 0.75 +0.1 329,866 - MMP_RS01770 0.75 +0.3 329,867 + MMP_RS01770 0.75 +0.9 329,915 + MMP_RS01770 0.77 -0.9 329,915 + MMP_RS01770 0.77 -0.1 329,915 + MMP_RS01770 0.77 +0.6 329,931 - MMP_RS01770 0.78 +1.1 329,946 - MMP_RS01770 0.79 -0.6 329,946 - MMP_RS01770 0.79 -0.4 329,950 - MMP_RS01770 0.79 -0.0 329,951 + MMP_RS01770 0.79 +1.6 329,952 - MMP_RS01770 0.79 +0.8 329,952 - MMP_RS01770 0.79 -0.8 329,952 - MMP_RS01770 0.79 +0.6 329,953 + MMP_RS01770 0.79 -0.9 329,953 + MMP_RS01770 0.79 -0.1 330,035 - MMP_RS01770 0.84 -1.3 330,036 + MMP_RS01770 0.84 +1.2 330,119 - MMP_RS01770 0.88 +0.0 330,120 + MMP_RS01770 0.88 -0.1 330,154 - -2.3 330,154 - -0.5 330,158 - +0.5 330,158 - +1.2 330,159 + -2.2 330,162 + -2.2 330,199 - -0.2 330,200 + -1.6 330,204 - -0.2 330,245 - +1.1 330,246 + +1.0 330,246 + +1.6 330,271 - +1.9 330,272 + -0.4 330,279 - +2.2 330,300 + -1.0 330,337 - -0.8 330,477 - +1.0 330,493 + +1.3 330,496 - +0.6 330,506 - +1.2 330,527 - +1.5 330,538 - +1.2 330,598 + +0.3 330,599 - +1.6 330,603 + +0.9 330,604 - +3.1 330,604 - +2.9 330,628 + +0.0 330,756 - MMP_RS01775 0.11 +2.7 330,967 - MMP_RS01775 0.40 +2.4 331,348 - +2.0 331,372 - +2.6 331,388 + +0.4 331,388 + +2.6 331,439 - -0.3 331,439 - +1.6 331,463 + -0.6 331,471 + +1.2 331,499 + +0.6 331,503 - +1.4 331,504 + +1.1 331,510 + +1.6 331,806 - MMP_RS01780 0.36 +2.0 331,831 + MMP_RS01780 0.39 -0.8 331,884 + MMP_RS01780 0.47 -0.1 332,120 - MMP_RS01780 0.80 +0.8 332,146 - MMP_RS01780 0.84 -1.0 332,159 - MMP_RS01780 0.86 +0.3 332,159 - MMP_RS01780 0.86 -1.5 332,159 - MMP_RS01780 0.86 -3.1 332,160 + MMP_RS01780 0.86 +0.2 332,228 - -4.2 332,245 + +2.2 332,258 + -0.1 332,294 + +1.1 332,296 - -1.8 332,336 + -1.9 332,337 - +1.6 332,372 - MMP_RS01785 0.10 -0.1
Or see this region's nucleotide sequence