Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
Position (kb) 183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 182.281 kb on - strand, within MMP_RS00975 at 182.293 kb on + strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.329 kb on + strand, within MMP_RS00975 at 182.332 kb on - strand, within MMP_RS00975 at 182.359 kb on - strand, within MMP_RS00975 at 182.399 kb on + strand, within MMP_RS00975 at 182.579 kb on + strand, within MMP_RS00975 at 182.621 kb on + strand, within MMP_RS00975 at 182.696 kb on + strand, within MMP_RS00975 at 182.714 kb on - strand, within MMP_RS00975 at 182.715 kb on + strand, within MMP_RS00975 at 182.782 kb on - strand, within MMP_RS00975 at 182.895 kb on - strand, within MMP_RS00975 at 182.950 kb on + strand at 183.001 kb on - strand at 183.007 kb on - strand at 183.022 kb on + strand at 183.031 kb on + strand at 183.082 kb on - strand at 183.096 kb on - strand at 183.114 kb on - strand at 183.114 kb on - strand at 183.160 kb on - strand at 183.160 kb on - strand at 183.161 kb on + strand at 183.164 kb on - strand at 183.164 kb on - strand at 183.165 kb on + strand at 183.165 kb on + strand at 183.172 kb on + strand at 183.192 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.236 kb on - strand at 183.248 kb on + strand at 183.248 kb on + strand at 183.344 kb on - strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.350 kb on - strand, within MMP_RS00980 at 183.351 kb on + strand, within MMP_RS00980 at 183.370 kb on - strand, within MMP_RS00980 at 183.371 kb on + strand, within MMP_RS00980 at 183.467 kb on - strand, within MMP_RS00980 at 183.540 kb on - strand, within MMP_RS00980 at 183.552 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.612 kb on + strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.614 kb on + strand, within MMP_RS00980 at 183.618 kb on - strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.634 kb on - strand at 183.689 kb on + strand at 183.689 kb on + strand at 183.800 kb on + strand at 183.813 kb on + strand at 183.923 kb on - strand at 184.097 kb on - strand, within MMP_RS00985 at 184.127 kb on - strand, within MMP_RS00985 at 184.128 kb on + strand, within MMP_RS00985 at 184.182 kb on + strand, within MMP_RS00985 at 184.291 kb on - strand, within MMP_RS00985
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 182,281 - MMP_RS00975 0.42 +0.5 182,293 + MMP_RS00975 0.43 +2.8 182,328 - MMP_RS00975 0.46 +0.4 182,328 - MMP_RS00975 0.46 +0.9 182,329 + MMP_RS00975 0.46 +0.7 182,332 - MMP_RS00975 0.46 +1.2 182,359 - MMP_RS00975 0.48 +0.2 182,399 + MMP_RS00975 0.51 +2.6 182,579 + MMP_RS00975 0.64 +0.9 182,621 + MMP_RS00975 0.67 +0.8 182,696 + MMP_RS00975 0.73 +0.2 182,714 - MMP_RS00975 0.74 +0.6 182,715 + MMP_RS00975 0.74 +2.9 182,782 - MMP_RS00975 0.79 +1.0 182,895 - MMP_RS00975 0.87 -1.6 182,950 + +0.8 183,001 - +0.1 183,007 - +2.2 183,022 + +0.9 183,031 + +1.8 183,082 - -0.4 183,096 - +0.1 183,114 - -1.1 183,114 - +1.1 183,160 - +2.6 183,160 - +1.0 183,161 + +0.6 183,164 - +0.5 183,164 - -0.2 183,165 + -1.2 183,165 + +0.2 183,172 + -1.7 183,192 - +0.3 183,198 - +1.1 183,198 - +0.8 183,198 - +0.3 183,236 - +0.3 183,248 + -1.2 183,248 + +0.9 183,344 - MMP_RS00980 0.28 +2.4 183,345 + MMP_RS00980 0.28 +1.9 183,345 + MMP_RS00980 0.28 +0.6 183,350 - MMP_RS00980 0.29 +0.9 183,351 + MMP_RS00980 0.29 +0.2 183,370 - MMP_RS00980 0.33 +0.8 183,371 + MMP_RS00980 0.34 +2.7 183,467 - MMP_RS00980 0.54 +0.3 183,540 - MMP_RS00980 0.70 +0.1 183,552 - MMP_RS00980 0.72 +0.1 183,611 - MMP_RS00980 0.85 +1.6 183,611 - MMP_RS00980 0.85 +0.9 183,612 + MMP_RS00980 0.85 +1.3 183,613 - MMP_RS00980 0.86 +0.5 183,613 - MMP_RS00980 0.86 -1.3 183,613 - MMP_RS00980 0.86 +1.0 183,614 + MMP_RS00980 0.86 -0.6 183,618 - MMP_RS00980 0.87 +0.8 183,619 + MMP_RS00980 0.87 -0.3 183,619 + MMP_RS00980 0.87 -0.5 183,634 - -0.8 183,689 + +0.9 183,689 + +0.9 183,800 + -1.3 183,813 + +0.3 183,923 - -0.1 184,097 - MMP_RS00985 0.17 +0.6 184,127 - MMP_RS00985 0.18 +0.3 184,128 + MMP_RS00985 0.18 -0.5 184,182 + MMP_RS00985 0.20 -3.4 184,291 - MMP_RS00985 0.25 -1.6
Or see this region's nucleotide sequence