Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00660 and MMP_RS00665 are separated by 9 nucleotides MMP_RS00665 and MMP_RS00670 are separated by 33 nucleotides MMP_RS00670 and MMP_RS00675 are separated by 168 nucleotides MMP_RS00675 and MMP_RS00680 are separated by 132 nucleotides
MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822
_RS00660
MMP_RS00665: MMP_RS00665 - hypothetical protein, at 121,832 to 122,641
_RS00665
MMP_RS00670: MMP_RS00670 - TIM barrel protein, at 122,675 to 123,331
_RS00670
MMP_RS00675: MMP_RS00675 - nitroreductase family protein, at 123,500 to 124,021
_RS00675
MMP_RS00680: MMP_RS00680 - N-acetyl-gamma-glutamyl-phosphate reductase, at 124,154 to 125,185
_RS00680
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 121.916 kb on + strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.237 kb on - strand, within MMP_RS00665 at 122.443 kb on - strand, within MMP_RS00665 at 122.596 kb on - strand at 122.600 kb on - strand at 122.607 kb on + strand at 122.615 kb on + strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.652 kb on + strand at 122.655 kb on - strand at 122.661 kb on + strand at 122.666 kb on - strand at 122.667 kb on + strand at 122.671 kb on - strand at 122.698 kb on - strand at 122.699 kb on + strand at 122.853 kb on - strand, within MMP_RS00670 at 122.857 kb on - strand, within MMP_RS00670 at 122.927 kb on - strand, within MMP_RS00670 at 122.972 kb on - strand, within MMP_RS00670 at 123.364 kb on - strand at 123.414 kb on - strand at 123.416 kb on - strand at 123.446 kb on - strand at 123.466 kb on - strand at 123.859 kb on + strand, within MMP_RS00675 at 124.055 kb on - strand at 124.094 kb on + strand at 124.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 121,916 + MMP_RS00665 0.10 -2.8 122,121 - MMP_RS00665 0.36 +0.4 122,121 - MMP_RS00665 0.36 -0.9 122,237 - MMP_RS00665 0.50 +0.8 122,443 - MMP_RS00665 0.75 +2.8 122,596 - +1.0 122,600 - +0.6 122,607 + -2.5 122,615 + +0.8 122,651 - +0.1 122,651 - -0.5 122,652 + +1.5 122,655 - -0.2 122,661 + -0.4 122,666 - +0.5 122,667 + +0.2 122,671 - -2.7 122,698 - +1.6 122,699 + -1.1 122,853 - MMP_RS00670 0.27 +3.8 122,857 - MMP_RS00670 0.28 +1.3 122,927 - MMP_RS00670 0.38 +1.2 122,972 - MMP_RS00670 0.45 +1.4 123,364 - -0.1 123,414 - -0.8 123,416 - +0.5 123,446 - +0.1 123,466 - +0.4 123,859 + MMP_RS00675 0.69 +0.8 124,055 - +2.3 124,094 + +1.8 124,109 + +1.0
Or see this region's nucleotide sequence