Experiment: McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00375 and MMP_RS00380 are separated by 103 nucleotides MMP_RS00380 and MMP_RS00385 are separated by 201 nucleotides MMP_RS00385 and MMP_RS00390 are separated by 28 nucleotides
MMP_RS00375: MMP_RS00375 - ammonium transporter, at 77,116 to 78,342
_RS00375
MMP_RS00380: MMP_RS00380 - P-II family nitrogen regulator, at 78,446 to 78,784
_RS00380
MMP_RS00385: MMP_RS00385 - P-II family nitrogen regulator, at 78,986 to 79,324
_RS00385
MMP_RS00390: MMP_RS00390 - ammonium transporter, at 79,353 to 80,588
_RS00390
Position (kb) 78
79
80 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 78.068 kb on - strand, within MMP_RS00375 at 78.165 kb on + strand, within MMP_RS00375 at 78.174 kb on + strand, within MMP_RS00375 at 78.273 kb on - strand at 78.372 kb on + strand at 78.375 kb on - strand at 78.376 kb on + strand at 78.378 kb on - strand at 78.378 kb on - strand at 78.378 kb on - strand at 78.379 kb on + strand at 78.381 kb on - strand at 78.381 kb on - strand at 78.381 kb on - strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.384 kb on + strand at 78.617 kb on + strand, within MMP_RS00380 at 78.641 kb on + strand, within MMP_RS00380 at 78.663 kb on - strand, within MMP_RS00380 at 78.723 kb on - strand, within MMP_RS00380 at 78.745 kb on - strand, within MMP_RS00380 at 78.746 kb on + strand, within MMP_RS00380 at 78.782 kb on - strand at 78.783 kb on + strand at 78.833 kb on - strand at 78.847 kb on - strand at 78.847 kb on - strand at 78.848 kb on + strand at 78.848 kb on + strand at 78.972 kb on - strand at 79.213 kb on + strand, within MMP_RS00385 at 79.229 kb on - strand, within MMP_RS00385 at 79.231 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.323 kb on + strand at 79.323 kb on + strand at 79.325 kb on - strand at 79.325 kb on - strand at 79.348 kb on - strand at 79.348 kb on - strand at 79.466 kb on + strand at 79.607 kb on + strand, within MMP_RS00390 at 79.919 kb on + strand, within MMP_RS00390 at 80.013 kb on - strand, within MMP_RS00390 at 80.013 kb on - strand, within MMP_RS00390 at 80.014 kb on + strand, within MMP_RS00390 at 80.072 kb on - strand, within MMP_RS00390 at 80.086 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.240 kb on + strand, within MMP_RS00390 at 80.279 kb on - strand, within MMP_RS00390 at 80.311 kb on - strand, within MMP_RS00390 at 80.312 kb on + strand, within MMP_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM remove 78,068 - MMP_RS00375 0.78 -0.4 78,165 + MMP_RS00375 0.85 -1.4 78,174 + MMP_RS00375 0.86 +0.1 78,273 - -0.1 78,372 + +0.9 78,375 - +1.5 78,376 + +1.6 78,378 - -0.6 78,378 - -1.5 78,378 - +1.3 78,379 + +0.5 78,381 - -0.9 78,381 - +0.8 78,381 - +0.5 78,382 + +1.3 78,382 + -0.7 78,382 + +0.8 78,382 + -0.6 78,384 + +1.3 78,617 + MMP_RS00380 0.50 -0.3 78,641 + MMP_RS00380 0.58 +0.7 78,663 - MMP_RS00380 0.64 +0.1 78,723 - MMP_RS00380 0.82 +0.6 78,745 - MMP_RS00380 0.88 -0.2 78,746 + MMP_RS00380 0.88 +0.8 78,782 - -0.6 78,783 + +0.9 78,833 - -1.2 78,847 - +0.0 78,847 - -4.4 78,848 + +0.7 78,848 + +1.1 78,972 - -0.6 79,213 + MMP_RS00385 0.67 +1.5 79,229 - MMP_RS00385 0.72 -0.1 79,231 - MMP_RS00385 0.72 -0.9 79,281 - MMP_RS00385 0.87 +1.4 79,281 - MMP_RS00385 0.87 +0.4 79,281 - MMP_RS00385 0.87 +1.4 79,323 + +0.0 79,323 + -1.0 79,325 - +0.8 79,325 - +0.6 79,348 - -1.5 79,348 - -0.9 79,466 + +2.0 79,607 + MMP_RS00390 0.21 -0.3 79,919 + MMP_RS00390 0.46 +0.5 80,013 - MMP_RS00390 0.53 -0.8 80,013 - MMP_RS00390 0.53 -0.8 80,014 + MMP_RS00390 0.53 -2.7 80,072 - MMP_RS00390 0.58 +0.3 80,086 - MMP_RS00390 0.59 -2.9 80,158 - MMP_RS00390 0.65 +0.9 80,158 - MMP_RS00390 0.65 -0.7 80,158 - MMP_RS00390 0.65 -0.2 80,161 + MMP_RS00390 0.65 +0.8 80,161 + MMP_RS00390 0.65 -0.6 80,161 + MMP_RS00390 0.65 +0.3 80,240 + MMP_RS00390 0.72 +0.5 80,279 - MMP_RS00390 0.75 +0.2 80,311 - MMP_RS00390 0.78 -0.0 80,312 + MMP_RS00390 0.78 +1.4
Or see this region's nucleotide sequence