Experiment: McCas_formate_complete Lithium chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04660 and MMP_RS04665 are separated by 92 nucleotides MMP_RS04665 and MMP_RS04670 are separated by 301 nucleotides MMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides
MMP_RS04660: MMP_RS04660 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 890,226 to 891,452
_RS04660
MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625
_RS04665
MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586
_RS04670
MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249
_RS04675
Position (kb) 891
892
893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 890.594 kb on - strand at 890.595 kb on + strand at 890.716 kb on - strand at 890.906 kb on - strand at 891.420 kb on - strand at 891.431 kb on + strand at 891.442 kb on + strand at 891.473 kb on - strand at 891.479 kb on - strand at 891.543 kb on - strand at 891.544 kb on + strand at 891.626 kb on - strand at 891.666 kb on - strand at 891.666 kb on - strand at 891.667 kb on + strand at 891.667 kb on + strand at 891.669 kb on + strand at 891.669 kb on + strand at 891.692 kb on + strand at 891.692 kb on + strand at 891.701 kb on + strand at 891.805 kb on - strand at 891.808 kb on + strand at 891.827 kb on - strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.832 kb on - strand at 891.862 kb on - strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.917 kb on - strand, within MMP_RS04665 at 891.918 kb on + strand, within MMP_RS04665 at 891.922 kb on - strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.988 kb on + strand, within MMP_RS04665 at 892.003 kb on - strand, within MMP_RS04665 at 892.031 kb on + strand, within MMP_RS04665 at 892.038 kb on + strand, within MMP_RS04665 at 892.039 kb on - strand, within MMP_RS04665 at 892.040 kb on + strand, within MMP_RS04665 at 892.043 kb on - strand, within MMP_RS04665 at 892.074 kb on + strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.137 kb on - strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.192 kb on - strand, within MMP_RS04665 at 892.252 kb on - strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.288 kb on - strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.292 kb on - strand, within MMP_RS04665 at 892.364 kb on - strand, within MMP_RS04665 at 892.525 kb on + strand, within MMP_RS04665 at 892.550 kb on + strand, within MMP_RS04665 at 892.566 kb on + strand, within MMP_RS04665 at 892.628 kb on - strand, within MMP_RS04665 at 892.629 kb on + strand, within MMP_RS04665 at 892.808 kb on + strand, within MMP_RS04665 at 892.844 kb on - strand, within MMP_RS04665 at 892.944 kb on - strand, within MMP_RS04665 at 893.122 kb on - strand, within MMP_RS04665 at 893.148 kb on + strand, within MMP_RS04665 at 893.175 kb on + strand, within MMP_RS04665 at 893.175 kb on + strand, within MMP_RS04665 at 893.208 kb on - strand, within MMP_RS04665 at 893.208 kb on - strand, within MMP_RS04665 at 893.459 kb on + strand, within MMP_RS04665 at 893.502 kb on - strand, within MMP_RS04665 at 893.502 kb on - strand, within MMP_RS04665 at 893.503 kb on + strand, within MMP_RS04665 at 893.506 kb on - strand, within MMP_RS04665 at 893.506 kb on - strand, within MMP_RS04665 at 893.507 kb on + strand, within MMP_RS04665 at 893.509 kb on - strand, within MMP_RS04665 at 893.521 kb on - strand, within MMP_RS04665 at 893.539 kb on + strand, within MMP_RS04665 at 893.579 kb on - strand, within MMP_RS04665 at 893.579 kb on - strand, within MMP_RS04665 at 893.583 kb on - strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.595 kb on - strand, within MMP_RS04665 at 893.596 kb on + strand, within MMP_RS04665 at 893.611 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.634 kb on - strand, within MMP_RS04665 at 893.635 kb on + strand, within MMP_RS04665 at 893.657 kb on - strand, within MMP_RS04665 at 893.678 kb on + strand, within MMP_RS04665 at 893.678 kb on + strand, within MMP_RS04665 at 893.694 kb on - strand, within MMP_RS04665 at 893.694 kb on - strand, within MMP_RS04665 at 893.730 kb on + strand, within MMP_RS04665 at 893.730 kb on + strand, within MMP_RS04665 at 893.745 kb on - strand, within MMP_RS04665 at 893.809 kb on - strand, within MMP_RS04665 at 893.841 kb on - strand, within MMP_RS04665 at 893.965 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 894.025 kb on - strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.031 kb on + strand, within MMP_RS04665 at 894.048 kb on - strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.061 kb on - strand, within MMP_RS04665 at 894.068 kb on - strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.104 kb on + strand, within MMP_RS04665 at 894.130 kb on - strand, within MMP_RS04665 at 894.147 kb on - strand, within MMP_RS04665 at 894.152 kb on - strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.193 kb on - strand, within MMP_RS04665 at 894.194 kb on + strand, within MMP_RS04665 at 894.196 kb on + strand, within MMP_RS04665 at 894.207 kb on - strand, within MMP_RS04665 at 894.221 kb on - strand, within MMP_RS04665 at 894.252 kb on - strand, within MMP_RS04665 at 894.303 kb on - strand, within MMP_RS04665 at 894.345 kb on - strand at 894.346 kb on + strand at 894.445 kb on + strand at 894.445 kb on + strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.466 kb on + strand at 894.466 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.483 kb on - strand at 894.484 kb on + strand at 894.538 kb on - strand at 894.539 kb on + strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.650 kb on + strand at 894.665 kb on + strand at 894.665 kb on + strand at 894.666 kb on - strand at 894.680 kb on - strand at 894.681 kb on + strand at 894.727 kb on + strand at 894.757 kb on - strand at 894.757 kb on - strand at 894.758 kb on + strand at 894.762 kb on + strand at 894.804 kb on - strand at 894.805 kb on + strand at 894.809 kb on - strand at 894.810 kb on + strand at 894.892 kb on - strand at 894.903 kb on - strand at 894.906 kb on - strand at 894.911 kb on - strand at 894.911 kb on - strand at 894.922 kb on - strand at 894.988 kb on - strand at 895.000 kb on + strand, within MMP_RS04670 at 895.002 kb on + strand, within MMP_RS04670 at 895.006 kb on - strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.060 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.094 kb on - strand, within MMP_RS04670 at 895.130 kb on - strand, within MMP_RS04670 at 895.186 kb on - strand, within MMP_RS04670 at 895.232 kb on - strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.235 kb on + strand, within MMP_RS04670 at 895.417 kb on + strand, within MMP_RS04670 at 895.546 kb on + strand at 895.578 kb on + strand at 895.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Lithium chloride 125 mM remove 890,594 - -0.6 890,595 + -0.9 890,716 - -1.2 890,906 - +1.2 891,420 - -1.9 891,431 + +0.9 891,442 + -1.1 891,473 - +1.4 891,479 - -0.8 891,543 - +0.4 891,544 + +2.3 891,626 - +0.3 891,666 - -0.5 891,666 - -1.4 891,667 + +1.0 891,667 + +0.8 891,669 + +6.7 891,669 + +0.9 891,692 + -3.3 891,692 + +0.3 891,701 + -0.0 891,805 - -0.3 891,808 + -0.5 891,827 - +0.6 891,828 + -0.9 891,828 + +0.2 891,828 + +0.2 891,832 - -0.1 891,862 - MMP_RS04665 0.10 -0.7 891,863 + MMP_RS04665 0.10 +0.5 891,863 + MMP_RS04665 0.10 -2.0 891,917 - MMP_RS04665 0.12 +0.0 891,918 + MMP_RS04665 0.12 -1.3 891,922 - MMP_RS04665 0.12 -1.1 891,962 + MMP_RS04665 0.14 +0.9 891,962 + MMP_RS04665 0.14 +0.1 891,962 + MMP_RS04665 0.14 +0.6 891,988 + MMP_RS04665 0.14 +0.3 892,003 - MMP_RS04665 0.15 +0.5 892,031 + MMP_RS04665 0.16 -3.2 892,038 + MMP_RS04665 0.16 -0.1 892,039 - MMP_RS04665 0.16 +0.4 892,040 + MMP_RS04665 0.16 -2.0 892,043 - MMP_RS04665 0.16 +0.3 892,074 + MMP_RS04665 0.17 -0.2 892,094 - MMP_RS04665 0.18 +0.4 892,094 - MMP_RS04665 0.18 -0.8 892,137 - MMP_RS04665 0.19 -0.2 892,138 + MMP_RS04665 0.19 +1.0 892,138 + MMP_RS04665 0.19 +1.8 892,192 - MMP_RS04665 0.21 -1.4 892,252 - MMP_RS04665 0.23 +2.3 892,262 + MMP_RS04665 0.23 -0.1 892,262 + MMP_RS04665 0.23 +0.6 892,262 + MMP_RS04665 0.23 -0.2 892,282 - MMP_RS04665 0.24 -0.7 892,282 - MMP_RS04665 0.24 -0.2 892,288 - MMP_RS04665 0.24 +0.1 892,289 + MMP_RS04665 0.24 +1.0 892,289 + MMP_RS04665 0.24 +0.7 892,289 + MMP_RS04665 0.24 +0.9 892,292 - MMP_RS04665 0.24 -0.5 892,364 - MMP_RS04665 0.27 -0.2 892,525 + MMP_RS04665 0.32 -0.3 892,550 + MMP_RS04665 0.33 -0.4 892,566 + MMP_RS04665 0.33 -0.0 892,628 - MMP_RS04665 0.35 +0.1 892,629 + MMP_RS04665 0.35 +0.1 892,808 + MMP_RS04665 0.41 +5.5 892,844 - MMP_RS04665 0.42 +1.2 892,944 - MMP_RS04665 0.45 -1.8 893,122 - MMP_RS04665 0.51 +0.1 893,148 + MMP_RS04665 0.52 -1.2 893,175 + MMP_RS04665 0.53 +2.5 893,175 + MMP_RS04665 0.53 +0.5 893,208 - MMP_RS04665 0.54 -0.5 893,208 - MMP_RS04665 0.54 +0.6 893,459 + MMP_RS04665 0.62 +0.2 893,502 - MMP_RS04665 0.64 +0.9 893,502 - MMP_RS04665 0.64 -0.1 893,503 + MMP_RS04665 0.64 +0.5 893,506 - MMP_RS04665 0.64 +0.4 893,506 - MMP_RS04665 0.64 -1.2 893,507 + MMP_RS04665 0.64 +2.5 893,509 - MMP_RS04665 0.64 +0.5 893,521 - MMP_RS04665 0.64 -1.4 893,539 + MMP_RS04665 0.65 -1.8 893,579 - MMP_RS04665 0.66 +1.0 893,579 - MMP_RS04665 0.66 -0.9 893,583 - MMP_RS04665 0.66 +0.2 893,584 + MMP_RS04665 0.66 -0.3 893,584 + MMP_RS04665 0.66 +0.7 893,584 + MMP_RS04665 0.66 +0.6 893,595 - MMP_RS04665 0.67 +0.7 893,596 + MMP_RS04665 0.67 +0.0 893,611 - MMP_RS04665 0.67 -2.1 893,618 - MMP_RS04665 0.67 -0.4 893,618 - MMP_RS04665 0.67 +0.9 893,618 - MMP_RS04665 0.67 +0.5 893,634 - MMP_RS04665 0.68 -0.4 893,635 + MMP_RS04665 0.68 +0.3 893,657 - MMP_RS04665 0.69 -0.2 893,678 + MMP_RS04665 0.69 -3.0 893,678 + MMP_RS04665 0.69 -0.2 893,694 - MMP_RS04665 0.70 +1.8 893,694 - MMP_RS04665 0.70 +1.1 893,730 + MMP_RS04665 0.71 +0.5 893,730 + MMP_RS04665 0.71 +1.0 893,745 - MMP_RS04665 0.71 +2.6 893,809 - MMP_RS04665 0.73 +1.5 893,841 - MMP_RS04665 0.75 +1.3 893,965 + MMP_RS04665 0.79 +0.8 893,992 + MMP_RS04665 0.79 +0.1 893,992 + MMP_RS04665 0.79 +1.2 894,025 - MMP_RS04665 0.80 -0.2 894,026 + MMP_RS04665 0.81 -0.5 894,026 + MMP_RS04665 0.81 +1.7 894,030 - MMP_RS04665 0.81 +0.7 894,030 - MMP_RS04665 0.81 -0.4 894,030 - MMP_RS04665 0.81 +0.6 894,030 - MMP_RS04665 0.81 -0.1 894,031 + MMP_RS04665 0.81 +0.9 894,048 - MMP_RS04665 0.81 -0.3 894,049 + MMP_RS04665 0.81 +0.6 894,049 + MMP_RS04665 0.81 -2.2 894,061 - MMP_RS04665 0.82 +1.0 894,068 - MMP_RS04665 0.82 -3.4 894,069 + MMP_RS04665 0.82 +0.5 894,069 + MMP_RS04665 0.82 +0.4 894,104 + MMP_RS04665 0.83 +4.9 894,130 - MMP_RS04665 0.84 -2.9 894,147 - MMP_RS04665 0.84 +0.0 894,152 - MMP_RS04665 0.85 +1.1 894,179 + MMP_RS04665 0.85 +0.6 894,179 + MMP_RS04665 0.85 +1.3 894,193 - MMP_RS04665 0.86 -0.5 894,194 + MMP_RS04665 0.86 +0.7 894,196 + MMP_RS04665 0.86 +0.0 894,207 - MMP_RS04665 0.86 +0.7 894,221 - MMP_RS04665 0.87 -3.7 894,252 - MMP_RS04665 0.88 +2.3 894,303 - MMP_RS04665 0.90 -0.7 894,345 - -1.4 894,346 + +0.2 894,445 + -0.0 894,445 + +1.1 894,465 - +0.7 894,465 - +2.9 894,465 - -0.6 894,466 + -2.1 894,466 + -0.1 894,470 + -0.1 894,470 + +1.0 894,470 + -0.9 894,483 - +0.8 894,484 + -2.0 894,538 - -0.2 894,539 + -0.2 894,649 - -1.6 894,649 - -0.5 894,649 - -0.9 894,649 - -0.6 894,650 + +0.8 894,665 + -3.1 894,665 + +0.4 894,666 - +3.5 894,680 - -1.6 894,681 + +0.4 894,727 + +0.4 894,757 - +1.6 894,757 - -0.4 894,758 + +2.2 894,762 + -1.1 894,804 - +0.3 894,805 + -1.3 894,809 - +1.0 894,810 + -0.5 894,892 - -2.0 894,903 - -0.3 894,906 - -1.5 894,911 - +0.1 894,911 - +0.7 894,922 - +3.9 894,988 - -1.3 895,000 + MMP_RS04670 0.11 +0.5 895,002 + MMP_RS04670 0.11 -0.7 895,006 - MMP_RS04670 0.12 -0.1 895,007 + MMP_RS04670 0.12 -1.7 895,007 + MMP_RS04670 0.12 -1.3 895,060 + MMP_RS04670 0.20 -2.9 895,067 + MMP_RS04670 0.21 +0.2 895,067 + MMP_RS04670 0.21 -0.7 895,094 - MMP_RS04670 0.25 +1.2 895,130 - MMP_RS04670 0.31 +1.4 895,186 - MMP_RS04670 0.39 +1.5 895,232 - MMP_RS04670 0.46 -0.4 895,233 + MMP_RS04670 0.46 -0.5 895,233 + MMP_RS04670 0.46 +0.2 895,235 + MMP_RS04670 0.47 +1.4 895,417 + MMP_RS04670 0.74 +1.5 895,546 + -2.0 895,578 + +1.7 895,625 - -1.4
Or see this region's nucleotide sequence