Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05105

Experiment: McCas_formate_complete sodium nitrite 0.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05100 and MMP_RS05105 are separated by 159 nucleotidesMMP_RS05105 and MMP_RS05110 are separated by 4 nucleotidesMMP_RS05110 and MMP_RS05115 are separated by 10 nucleotides MMP_RS05100: MMP_RS05100 - CO dehydrogenase/acetyl-CoA synthase complex subunit alpha, at 970,041 to 972,383 _RS05100 MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418 _RS05105 MMP_RS05110: MMP_RS05110 - 16S ribosomal RNA methyltransferase A, at 973,423 to 974,226 _RS05110 MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124 _RS05115 Position (kb) 972 973 974Strain fitness (log2 ratio) -2 -1 0 1at 971.544 kb on - strand, within MMP_RS05100at 971.545 kb on + strand, within MMP_RS05100at 971.545 kb on + strand, within MMP_RS05100at 971.552 kb on - strand, within MMP_RS05100at 971.553 kb on + strand, within MMP_RS05100at 971.614 kb on + strand, within MMP_RS05100at 971.632 kb on + strand, within MMP_RS05100at 971.673 kb on - strand, within MMP_RS05100at 971.674 kb on + strand, within MMP_RS05100at 971.884 kb on + strand, within MMP_RS05100at 971.953 kb on + strand, within MMP_RS05100at 971.953 kb on + strand, within MMP_RS05100at 972.006 kb on - strand, within MMP_RS05100at 972.007 kb on + strand, within MMP_RS05100at 972.149 kb on - strandat 972.150 kb on + strandat 972.153 kb on - strandat 972.153 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.421 kb on + strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.423 kb on + strandat 972.426 kb on - strandat 972.427 kb on + strandat 972.427 kb on + strandat 972.435 kb on + strandat 972.586 kb on + strandat 972.586 kb on + strandat 972.587 kb on - strandat 972.587 kb on - strandat 972.591 kb on - strandat 972.591 kb on - strandat 972.633 kb on - strand, within MMP_RS05105at 972.791 kb on - strand, within MMP_RS05105at 972.842 kb on - strand, within MMP_RS05105at 972.915 kb on - strand, within MMP_RS05105at 972.932 kb on + strand, within MMP_RS05105at 973.021 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.210 kb on + strand, within MMP_RS05105at 973.212 kb on - strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.280 kb on + strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.298 kb on - strand, within MMP_RS05105at 973.299 kb on + strand, within MMP_RS05105at 973.300 kb on - strand, within MMP_RS05105at 973.421 kb on - strandat 973.453 kb on - strandat 973.506 kb on - strand, within MMP_RS05110at 973.671 kb on + strand, within MMP_RS05110at 973.711 kb on - strand, within MMP_RS05110at 973.712 kb on + strand, within MMP_RS05110at 973.775 kb on - strand, within MMP_RS05110at 973.776 kb on + strand, within MMP_RS05110at 973.810 kb on + strand, within MMP_RS05110at 973.854 kb on + strand, within MMP_RS05110at 973.987 kb on - strand, within MMP_RS05110at 973.987 kb on - strand, within MMP_RS05110at 974.243 kb on + strandat 974.243 kb on + strandat 974.249 kb on - strandat 974.365 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.414 kb on + strand, within MMP_RS05115at 974.415 kb on - strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM
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971,544 - MMP_RS05100 0.64 -0.5
971,545 + MMP_RS05100 0.64 -0.5
971,545 + MMP_RS05100 0.64 -0.1
971,552 - MMP_RS05100 0.64 +0.1
971,553 + MMP_RS05100 0.65 +0.1
971,614 + MMP_RS05100 0.67 -1.0
971,632 + MMP_RS05100 0.68 -0.5
971,673 - MMP_RS05100 0.70 -0.3
971,674 + MMP_RS05100 0.70 -0.9
971,884 + MMP_RS05100 0.79 -0.3
971,953 + MMP_RS05100 0.82 -0.9
971,953 + MMP_RS05100 0.82 -1.6
972,006 - MMP_RS05100 0.84 -0.0
972,007 + MMP_RS05100 0.84 +0.0
972,149 - -0.9
972,150 + -1.0
972,153 - -1.2
972,153 - -1.7
972,420 - -0.3
972,420 - -0.8
972,420 - -0.6
972,420 - -0.4
972,420 - -0.2
972,421 + -1.6
972,422 - -0.2
972,422 - -0.4
972,422 - -0.1
972,422 - -0.3
972,422 - -0.7
972,423 + -0.8
972,426 - -0.7
972,427 + -0.4
972,427 + -0.1
972,435 + +0.2
972,586 + -1.6
972,586 + -0.4
972,587 - -0.4
972,587 - -0.5
972,591 - -1.3
972,591 - -0.6
972,633 - MMP_RS05105 0.10 -0.7
972,791 - MMP_RS05105 0.28 -1.2
972,842 - MMP_RS05105 0.34 -0.4
972,915 - MMP_RS05105 0.42 -0.7
972,932 + MMP_RS05105 0.44 -0.9
973,021 - MMP_RS05105 0.55 -0.9
973,042 - MMP_RS05105 0.57 -1.2
973,042 - MMP_RS05105 0.57 -0.7
973,042 - MMP_RS05105 0.57 +0.5
973,042 - MMP_RS05105 0.57 -0.9
973,042 - MMP_RS05105 0.57 -0.4
973,043 + MMP_RS05105 0.57 -1.6
973,043 + MMP_RS05105 0.57 -0.9
973,043 + MMP_RS05105 0.57 -0.8
973,043 + MMP_RS05105 0.57 +0.5
973,206 - MMP_RS05105 0.76 -1.2
973,206 - MMP_RS05105 0.76 -0.3
973,206 - MMP_RS05105 0.76 -0.4
973,210 + MMP_RS05105 0.76 -0.8
973,212 - MMP_RS05105 0.76 -0.8
973,213 + MMP_RS05105 0.76 -1.7
973,213 + MMP_RS05105 0.76 -0.4
973,217 - MMP_RS05105 0.77 -1.9
973,217 - MMP_RS05105 0.77 -0.1
973,280 + MMP_RS05105 0.84 -0.5
973,287 - MMP_RS05105 0.85 -0.8
973,287 - MMP_RS05105 0.85 -0.2
973,287 - MMP_RS05105 0.85 -1.2
973,298 - MMP_RS05105 0.86 -1.1
973,299 + MMP_RS05105 0.86 -0.9
973,300 - MMP_RS05105 0.86 -1.0
973,421 - -0.7
973,453 - +0.5
973,506 - MMP_RS05110 0.10 +0.2
973,671 + MMP_RS05110 0.31 -0.3
973,711 - MMP_RS05110 0.36 +0.2
973,712 + MMP_RS05110 0.36 -0.1
973,775 - MMP_RS05110 0.44 +0.2
973,776 + MMP_RS05110 0.44 -0.3
973,810 + MMP_RS05110 0.48 -1.3
973,854 + MMP_RS05110 0.54 -0.0
973,987 - MMP_RS05110 0.70 +0.1
973,987 - MMP_RS05110 0.70 +0.2
974,243 + +0.0
974,243 + -1.2
974,249 - -1.1
974,365 - MMP_RS05115 0.14 +0.0
974,413 - MMP_RS05115 0.20 -1.2
974,413 - MMP_RS05115 0.20 -1.0
974,413 - MMP_RS05115 0.20 +0.7
974,413 - MMP_RS05115 0.20 -0.4
974,414 + MMP_RS05115 0.20 -0.2
974,415 - MMP_RS05115 0.20 +0.3
974,416 + MMP_RS05115 0.20 -1.1
974,416 + MMP_RS05115 0.20 -0.6
974,416 + MMP_RS05115 0.20 +0.4
974,416 + MMP_RS05115 0.20 -0.5
974,417 - MMP_RS05115 0.20 +0.3
974,417 - MMP_RS05115 0.20 -0.8
974,417 - MMP_RS05115 0.20 -0.8
974,417 - MMP_RS05115 0.20 -0.3
974,418 + MMP_RS05115 0.20 +0.2
974,418 + MMP_RS05115 0.20 -0.7
974,418 + MMP_RS05115 0.20 -0.8

Or see this region's nucleotide sequence