Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03760 and MMP_RS03765 are separated by 37 nucleotides MMP_RS03765 and MMP_RS03770 are separated by 252 nucleotides MMP_RS03770 and MMP_RS03775 are separated by 104 nucleotides MMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030
_RS03765
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708
_RS03775
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
Position (kb) 712
713
714 Strain fitness (log2 ratio) -2
-1
0
1
2 at 711.342 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.373 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.412 kb on - strand, within MMP_RS03760 at 711.427 kb on - strand, within MMP_RS03760 at 711.435 kb on + strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.566 kb on + strand at 711.569 kb on - strand at 711.598 kb on - strand at 711.598 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.633 kb on - strand at 711.633 kb on - strand at 711.690 kb on - strand, within MMP_RS03765 at 711.868 kb on - strand, within MMP_RS03765 at 711.870 kb on - strand, within MMP_RS03765 at 711.873 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.960 kb on - strand, within MMP_RS03765 at 711.984 kb on - strand, within MMP_RS03765 at 711.993 kb on - strand at 712.021 kb on - strand at 712.044 kb on + strand at 712.155 kb on + strand at 712.380 kb on - strand at 712.413 kb on - strand at 712.431 kb on - strand at 712.432 kb on + strand at 712.721 kb on + strand, within MMP_RS03770 at 712.723 kb on - strand, within MMP_RS03770 at 712.755 kb on + strand, within MMP_RS03770 at 712.860 kb on - strand, within MMP_RS03770 at 712.901 kb on + strand, within MMP_RS03770 at 713.064 kb on - strand, within MMP_RS03770 at 713.067 kb on + strand, within MMP_RS03770 at 713.153 kb on - strand, within MMP_RS03770 at 713.156 kb on + strand, within MMP_RS03770 at 713.234 kb on - strand, within MMP_RS03770 at 713.235 kb on + strand, within MMP_RS03770 at 713.281 kb on - strand, within MMP_RS03770 at 713.286 kb on + strand, within MMP_RS03770 at 713.853 kb on - strand at 713.939 kb on + strand at 713.962 kb on - strand at 714.010 kb on - strand at 714.011 kb on + strand at 714.075 kb on - strand at 714.228 kb on - strand, within MMP_RS03775 at 714.386 kb on - strand, within MMP_RS03775 at 714.403 kb on - strand, within MMP_RS03775 at 714.404 kb on + strand, within MMP_RS03775 at 714.660 kb on + strand at 714.816 kb on - strand at 714.817 kb on + strand at 714.859 kb on - strand at 714.861 kb on - strand at 714.877 kb on + strand at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 711,342 - MMP_RS03760 0.30 -0.9 711,371 - MMP_RS03760 0.39 -0.3 711,371 - MMP_RS03760 0.39 +0.2 711,371 - MMP_RS03760 0.39 -0.5 711,371 - MMP_RS03760 0.39 -0.3 711,372 + MMP_RS03760 0.39 -0.6 711,372 + MMP_RS03760 0.39 +0.2 711,372 + MMP_RS03760 0.39 +1.0 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 -0.3 711,372 + MMP_RS03760 0.39 -0.3 711,372 + MMP_RS03760 0.39 -0.2 711,373 - MMP_RS03760 0.39 +0.8 711,402 - MMP_RS03760 0.48 -0.5 711,402 - MMP_RS03760 0.48 -0.2 711,408 - MMP_RS03760 0.49 -0.1 711,408 - MMP_RS03760 0.49 +0.3 711,412 - MMP_RS03760 0.50 -0.3 711,427 - MMP_RS03760 0.55 -0.2 711,435 + MMP_RS03760 0.57 +0.2 711,444 - MMP_RS03760 0.60 -1.0 711,444 - MMP_RS03760 0.60 -0.1 711,566 + +0.6 711,569 - +0.8 711,598 - +0.2 711,598 - -0.4 711,602 - -1.6 711,602 - -0.7 711,602 - +2.0 711,633 - +0.3 711,633 - -0.1 711,690 - MMP_RS03765 0.16 -0.4 711,868 - MMP_RS03765 0.60 -0.2 711,870 - MMP_RS03765 0.61 -0.2 711,873 - MMP_RS03765 0.61 +0.2 711,893 - MMP_RS03765 0.66 -0.8 711,893 - MMP_RS03765 0.66 -1.3 711,960 - MMP_RS03765 0.83 -0.1 711,984 - MMP_RS03765 0.88 -0.4 711,993 - -0.8 712,021 - -1.1 712,044 + -0.4 712,155 + +0.0 712,380 - -0.3 712,413 - -1.3 712,431 - -1.6 712,432 + -0.3 712,721 + MMP_RS03770 0.27 -1.1 712,723 - MMP_RS03770 0.27 +0.0 712,755 + MMP_RS03770 0.29 -1.2 712,860 - MMP_RS03770 0.35 +0.3 712,901 + MMP_RS03770 0.38 -2.0 713,064 - MMP_RS03770 0.48 -0.7 713,067 + MMP_RS03770 0.48 -1.2 713,153 - MMP_RS03770 0.53 -0.3 713,156 + MMP_RS03770 0.53 -0.4 713,234 - MMP_RS03770 0.58 -1.0 713,235 + MMP_RS03770 0.58 -1.5 713,281 - MMP_RS03770 0.61 -0.2 713,286 + MMP_RS03770 0.61 -1.0 713,853 - +0.3 713,939 + +0.7 713,962 - -0.8 714,010 - +0.1 714,011 + +0.7 714,075 - -0.4 714,228 - MMP_RS03775 0.29 -0.4 714,386 - MMP_RS03775 0.53 -0.0 714,403 - MMP_RS03775 0.55 -1.2 714,404 + MMP_RS03775 0.55 -0.6 714,660 + +0.2 714,816 - -0.9 714,817 + +0.0 714,859 - -0.6 714,861 - -0.0 714,877 + -0.5 714,887 - +0.7 714,890 - +0.6 714,923 + MMP_RS03780 0.13 +1.5
Or see this region's nucleotide sequence