Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05010

Experiment: McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05005 and MMP_RS05010 are separated by 256 nucleotidesMMP_RS05010 and MMP_RS05015 are separated by 18 nucleotides MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893 _RS05005 MMP_RS05010: MMP_RS05010 - KEOPS complex subunit Cgi121, at 954,150 to 954,581 _RS05010 MMP_RS05015: MMP_RS05015 - histidinol dehydrogenase, at 954,600 to 955,874 _RS05015 Position (kb) 954 955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 953.160 kb on + strandat 953.175 kb on - strandat 953.175 kb on - strandat 953.186 kb on - strandat 953.186 kb on - strandat 953.187 kb on + strandat 953.187 kb on + strandat 953.206 kb on - strandat 953.393 kb on - strandat 953.393 kb on - strandat 953.574 kb on + strandat 953.588 kb on - strandat 953.924 kb on - strandat 953.925 kb on + strandat 953.925 kb on + strandat 953.934 kb on - strandat 953.934 kb on - strandat 953.935 kb on + strandat 953.963 kb on + strandat 953.967 kb on + strandat 953.968 kb on - strandat 953.969 kb on + strandat 953.988 kb on - strandat 953.988 kb on - strandat 953.989 kb on + strandat 954.022 kb on + strandat 954.046 kb on + strandat 954.049 kb on - strandat 954.050 kb on + strandat 954.050 kb on + strandat 954.052 kb on + strandat 954.061 kb on - strandat 954.069 kb on - strandat 954.069 kb on - strandat 954.071 kb on - strandat 954.074 kb on - strandat 954.080 kb on + strandat 954.138 kb on + strandat 954.157 kb on - strandat 954.268 kb on - strandat 954.269 kb on + strandat 954.271 kb on + strandat 954.294 kb on + strandat 954.322 kb on - strandat 954.650 kb on + strandat 954.791 kb on + strandat 954.839 kb on + strandat 954.979 kb on + strandat 955.060 kb on - strandat 955.394 kb on - strandat 955.394 kb on - strandat 955.401 kb on + strandat 955.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
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953,160 + -0.9
953,175 - -0.1
953,175 - -1.2
953,186 - +0.3
953,186 - +0.0
953,187 + +0.4
953,187 + +0.8
953,206 - -2.3
953,393 - -0.8
953,393 - -2.0
953,574 + -2.1
953,588 - -3.1
953,924 - -2.1
953,925 + -1.1
953,925 + -4.1
953,934 - -2.1
953,934 - -2.4
953,935 + -2.4
953,963 + -1.7
953,967 + -1.9
953,968 - -0.3
953,969 + +0.4
953,988 - -2.5
953,988 - +0.9
953,989 + -0.2
954,022 + -0.1
954,046 + -0.1
954,049 - -2.9
954,050 + +1.2
954,050 + +0.7
954,052 + -2.4
954,061 - -0.6
954,069 - -2.7
954,069 - -2.4
954,071 - -3.0
954,074 - -3.1
954,080 + -1.9
954,138 + -4.1
954,157 - -3.8
954,268 - -1.6
954,269 + -2.6
954,271 + -2.1
954,294 + -1.0
954,322 - -3.1
954,650 + -2.8
954,791 + -1.5
954,839 + +0.2
954,979 + -2.1
955,060 - -1.8
955,394 - -0.8
955,394 - -0.8
955,401 + -0.8
955,554 - -1.0

Or see this region's nucleotide sequence