Experiment: McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01520 and MMP_RS01525 are separated by 188 nucleotides MMP_RS01525 and MMP_RS01530 are separated by 150 nucleotides MMP_RS01530 and MMP_RS01535 are separated by 134 nucleotides
MMP_RS01520: MMP_RS01520 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 283,401 to 283,877
_RS01520
MMP_RS01525: MMP_RS01525 - nucleoside-diphosphate kinase, at 284,066 to 284,485
_RS01525
MMP_RS01530: MMP_RS01530 - translation initiation factor IF-2, at 284,636 to 286,441
_RS01530
MMP_RS01535: MMP_RS01535 - DHH family phosphoesterase, at 286,576 to 288,036
_RS01535
Position (kb)
284
285
286
287 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 283.929 kb on - strand at 283.933 kb on - strand at 283.933 kb on - strand at 283.934 kb on + strand at 283.960 kb on + strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.996 kb on + strand at 284.000 kb on - strand at 284.006 kb on + strand at 284.062 kb on - strand at 284.226 kb on + strand, within MMP_RS01525 at 284.538 kb on - strand at 284.539 kb on + strand at 284.545 kb on - strand at 284.549 kb on - strand at 284.557 kb on - strand at 284.557 kb on - strand at 284.709 kb on - strand at 284.709 kb on - strand at 284.988 kb on - strand at 285.166 kb on + strand at 285.274 kb on + strand at 285.283 kb on + strand at 285.874 kb on - strand at 286.119 kb on + strand at 286.263 kb on - strand at 286.296 kb on - strand at 286.296 kb on - strand at 286.483 kb on - strand at 286.484 kb on + strand at 286.485 kb on - strand at 286.486 kb on + strand at 286.500 kb on + strand at 286.506 kb on + strand at 286.544 kb on + strand at 286.768 kb on + strand at 286.832 kb on - strand at 286.846 kb on - strand at 286.848 kb on - strand at 286.849 kb on + strand at 286.868 kb on - strand at 286.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM remove 283,929 - -0.3 283,933 - +1.0 283,933 - +0.1 283,934 + -1.3 283,960 + -0.1 283,995 - +0.3 283,995 - -2.2 283,995 - +0.4 283,996 + +0.5 284,000 - +0.2 284,006 + +2.5 284,062 - -0.7 284,226 + MMP_RS01525 0.38 +1.2 284,538 - -3.4 284,539 + -1.8 284,545 - -3.5 284,549 - -1.1 284,557 - -0.8 284,557 - +2.5 284,709 - -0.9 284,709 - -1.8 284,988 - -0.4 285,166 + +0.9 285,274 + +0.5 285,283 + +0.5 285,874 - -0.9 286,119 + -3.1 286,263 - -1.5 286,296 - -1.5 286,296 - -1.7 286,483 - -1.5 286,484 + -1.1 286,485 - -3.2 286,486 + +2.3 286,500 + -0.9 286,506 + +1.3 286,544 + +0.1 286,768 + -1.5 286,832 - -2.1 286,846 - -2.9 286,848 - -0.5 286,849 + -2.3 286,868 - -2.5 286,911 - -2.5
Or see this region's nucleotide sequence