Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01530

Experiment: McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01520 and MMP_RS01525 are separated by 188 nucleotidesMMP_RS01525 and MMP_RS01530 are separated by 150 nucleotidesMMP_RS01530 and MMP_RS01535 are separated by 134 nucleotides MMP_RS01520: MMP_RS01520 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 283,401 to 283,877 _RS01520 MMP_RS01525: MMP_RS01525 - nucleoside-diphosphate kinase, at 284,066 to 284,485 _RS01525 MMP_RS01530: MMP_RS01530 - translation initiation factor IF-2, at 284,636 to 286,441 _RS01530 MMP_RS01535: MMP_RS01535 - DHH family phosphoesterase, at 286,576 to 288,036 _RS01535 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 283.929 kb on - strandat 283.933 kb on - strandat 283.933 kb on - strandat 283.934 kb on + strandat 283.960 kb on + strandat 283.995 kb on - strandat 283.995 kb on - strandat 283.995 kb on - strandat 283.996 kb on + strandat 284.000 kb on - strandat 284.006 kb on + strandat 284.062 kb on - strandat 284.226 kb on + strand, within MMP_RS01525at 284.538 kb on - strandat 284.539 kb on + strandat 284.545 kb on - strandat 284.549 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.709 kb on - strandat 284.709 kb on - strandat 284.988 kb on - strandat 285.166 kb on + strandat 285.274 kb on + strandat 285.283 kb on + strandat 285.874 kb on - strandat 286.119 kb on + strandat 286.263 kb on - strandat 286.296 kb on - strandat 286.296 kb on - strandat 286.483 kb on - strandat 286.484 kb on + strandat 286.485 kb on - strandat 286.486 kb on + strandat 286.500 kb on + strandat 286.506 kb on + strandat 286.544 kb on + strandat 286.768 kb on + strandat 286.832 kb on - strandat 286.846 kb on - strandat 286.848 kb on - strandat 286.849 kb on + strandat 286.868 kb on - strandat 286.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
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283,929 - -0.3
283,933 - +1.0
283,933 - +0.1
283,934 + -1.3
283,960 + -0.1
283,995 - +0.3
283,995 - -2.2
283,995 - +0.4
283,996 + +0.5
284,000 - +0.2
284,006 + +2.5
284,062 - -0.7
284,226 + MMP_RS01525 0.38 +1.2
284,538 - -3.4
284,539 + -1.8
284,545 - -3.5
284,549 - -1.1
284,557 - -0.8
284,557 - +2.5
284,709 - -0.9
284,709 - -1.8
284,988 - -0.4
285,166 + +0.9
285,274 + +0.5
285,283 + +0.5
285,874 - -0.9
286,119 + -3.1
286,263 - -1.5
286,296 - -1.5
286,296 - -1.7
286,483 - -1.5
286,484 + -1.1
286,485 - -3.2
286,486 + +2.3
286,500 + -0.9
286,506 + +1.3
286,544 + +0.1
286,768 + -1.5
286,832 - -2.1
286,846 - -2.9
286,848 - -0.5
286,849 + -2.3
286,868 - -2.5
286,911 - -2.5

Or see this region's nucleotide sequence