Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08730

Experiment: R2A_PIPES with Cobalt chloride 256 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cobalt chloride 256 uM
1,899,296	+				+1.5
1,899,296	+				+0.1
1,899,296	+				+1.9
1,899,296	+				+0.1
1,899,296	+				+0.8
1,899,296	+				+0.8
1,899,297	-				-0.8
1,899,297	-				+1.5
1,899,297	-				+0.1
1,899,656	+		LRK54_RS08725	0.47	-1.1
1,899,656	+		LRK54_RS08725	0.47	+1.1
1,899,656	+		LRK54_RS08725	0.47	+0.7
1,899,656	+		LRK54_RS08725	0.47	+1.4
1,899,656	+		LRK54_RS08725	0.47	+1.0
1,899,656	+		LRK54_RS08725	0.47	+0.2
1,899,656	+		LRK54_RS08725	0.47	-0.0
1,899,656	+		LRK54_RS08725	0.47	+1.1
1,899,656	+		LRK54_RS08725	0.47	+0.9
1,899,656	+		LRK54_RS08725	0.47	+0.0
1,899,656	+		LRK54_RS08725	0.47	-0.5
1,899,656	+		LRK54_RS08725	0.47	-0.3
1,899,656	+		LRK54_RS08725	0.47	+0.9
1,899,656	+		LRK54_RS08725	0.47	-0.5
1,899,657	-		LRK54_RS08725	0.48	+0.6
1,899,657	-		LRK54_RS08725	0.48	+0.6
1,899,657	-		LRK54_RS08725	0.48	+0.2
1,899,657	-		LRK54_RS08725	0.48	-1.1
1,899,657	-		LRK54_RS08725	0.48	-0.8
1,899,657	-		LRK54_RS08725	0.48	+1.6
1,899,657	-		LRK54_RS08725	0.48	-1.6
1,899,657	-		LRK54_RS08725	0.48	-0.9
1,899,665	+		LRK54_RS08725	0.48	+0.5
1,899,666	-		LRK54_RS08725	0.49	-0.9
1,899,746	+		LRK54_RS08725	0.58	-0.9
1,899,746	+		LRK54_RS08725	0.58	+0.3
1,899,746	+		LRK54_RS08725	0.58	-0.2
1,899,747	-		LRK54_RS08725	0.58	-0.5
1,899,747	-		LRK54_RS08725	0.58	-0.2
1,899,747	-		LRK54_RS08725	0.58	-0.2
1,899,747	-		LRK54_RS08725	0.58	+0.2
1,899,815	+		LRK54_RS08725	0.65	-1.0
1,899,815	+		LRK54_RS08725	0.65	-0.1
1,899,815	+		LRK54_RS08725	0.65	-0.2
1,899,968	+		LRK54_RS08725	0.82	+0.7
1,899,968	+		LRK54_RS08725	0.82	-1.4
1,899,968	+		LRK54_RS08725	0.82	+2.9
1,899,968	+		LRK54_RS08725	0.82	-2.1
1,899,968	+		LRK54_RS08725	0.82	+0.5
1,899,968	+		LRK54_RS08725	0.82	+0.3
1,899,968	+		LRK54_RS08725	0.82	+0.6
1,899,968	+		LRK54_RS08725	0.82	-1.1
1,899,968	+		LRK54_RS08725	0.82	+0.2
1,899,968	+		LRK54_RS08725	0.82	+0.1
1,899,968	+		LRK54_RS08725	0.82	+0.1
1,899,968	+		LRK54_RS08725	0.82	-0.1
1,899,968	+		LRK54_RS08725	0.82	+0.9
1,899,968	+		LRK54_RS08725	0.82	-0.8
1,899,968	+		LRK54_RS08725	0.82	+0.2
1,899,969	-		LRK54_RS08725	0.83	-2.5
1,899,969	-		LRK54_RS08725	0.83	-0.5
1,899,969	-		LRK54_RS08725	0.83	+0.6
1,899,969	-		LRK54_RS08725	0.83	+0.6
1,899,969	-		LRK54_RS08725	0.83	-0.3
1,899,969	-		LRK54_RS08725	0.83	-0.6
1,899,969	-		LRK54_RS08725	0.83	-0.7
1,899,969	-		LRK54_RS08725	0.83	-1.8
1,899,969	-		LRK54_RS08725	0.83	+0.0
1,899,969	-		LRK54_RS08725	0.83	+0.3
1,899,969	-		LRK54_RS08725	0.83	+2.6
1,899,969	-		LRK54_RS08725	0.83	+1.2
1,899,969	-		LRK54_RS08725	0.83	+0.3
1,899,969	-		LRK54_RS08725	0.83	-0.7
1,899,969	-		LRK54_RS08725	0.83	+0.8
1,900,007	+		LRK54_RS08725	0.87	+1.9
1,900,007	+		LRK54_RS08725	0.87	+1.3
1,900,008	-		LRK54_RS08725	0.87	+1.5
1,900,082	+				+0.8
1,900,082	+				+0.9
1,900,082	+				+0.6
1,900,082	+				+0.1
1,900,082	+				+0.4
1,900,177	+				+0.6
1,900,191	+				-0.4
1,900,191	+				-0.5
1,900,191	+				-0.8
1,900,191	+				-1.1
1,900,191	+				-0.1
1,900,191	+				-2.3
1,900,191	+				-1.6
1,900,191	+				-0.8
1,900,191	+				-0.2
1,900,191	+				-1.8
1,900,191	+				-0.9
1,900,191	+				-0.6
1,900,191	+				-0.1
1,900,192	-				-1.4
1,900,192	-				+0.2
1,900,192	-				-1.7
1,900,192	-				-0.5
1,900,192	-				-0.2
1,900,192	-				-0.1
1,900,192	-				-2.5
1,900,192	-				+1.1
1,900,192	-				+0.5
1,900,192	-				-0.7
1,900,192	-				+0.1
1,900,192	-				-1.9
1,900,192	-				+0.0
1,900,192	-				-1.4
1,900,192	-				-0.2
1,900,192	-				+1.0
1,900,194	+				+0.5
1,900,194	+				-1.4
1,900,194	+				+3.4
1,900,194	+				+0.5
1,900,194	+				-0.5
1,900,194	+				-0.5
1,900,194	+				+0.2
1,900,194	+				+1.1
1,900,194	+				-3.1
1,900,194	+				-0.7
1,900,194	+				-0.2
1,900,194	+				+0.1
1,900,194	+				-0.9
1,900,194	+				-0.1
1,900,194	+				-0.6
1,900,194	+				-1.5
1,900,194	+				+0.4
1,900,194	+				+0.2
1,900,195	-				-0.6
1,900,195	-				-3.2
1,900,195	-				-1.5
1,900,195	-				-1.2
1,900,195	-				-1.7
1,900,195	-				+0.5
1,900,195	-				-1.7
1,900,195	-				-1.5
1,900,195	-				-0.2
1,900,195	-				-0.6
1,900,195	-				-1.3
1,900,195	-				+0.8
1,900,201	+				-0.1
1,900,479	+		LRK54_RS08730	0.32	+3.1
1,900,479	+		LRK54_RS08730	0.32	+0.7
1,900,479	+		LRK54_RS08730	0.32	+0.2
1,900,480	-		LRK54_RS08730	0.32	-2.2
1,900,480	-		LRK54_RS08730	0.32	-0.3
1,900,480	-		LRK54_RS08730	0.32	-0.8
1,900,480	-		LRK54_RS08730	0.32	-1.9
1,900,480	-		LRK54_RS08730	0.32	+0.1
1,900,480	-		LRK54_RS08730	0.32	-0.8
1,900,525	+		LRK54_RS08730	0.37	-0.4
1,900,525	+		LRK54_RS08730	0.37	+0.1
1,900,525	+		LRK54_RS08730	0.37	-0.8
1,900,526	-		LRK54_RS08730	0.38	+0.5
1,900,526	-		LRK54_RS08730	0.38	+0.5
1,900,570	+		LRK54_RS08730	0.43	-1.8
1,900,570	+		LRK54_RS08730	0.43	+0.8
1,900,570	+		LRK54_RS08730	0.43	+0.2
1,900,570	+		LRK54_RS08730	0.43	-0.5
1,900,570	+		LRK54_RS08730	0.43	-2.0
1,900,570	+		LRK54_RS08730	0.43	+0.5
1,900,570	+		LRK54_RS08730	0.43	-1.5
1,900,570	+		LRK54_RS08730	0.43	-1.7
1,900,570	+		LRK54_RS08730	0.43	-2.3
1,900,570	+		LRK54_RS08730	0.43	-0.9
1,900,570	+		LRK54_RS08730	0.43	+1.4
1,900,570	+		LRK54_RS08730	0.43	+1.0
1,900,570	+		LRK54_RS08730	0.43	+2.1
1,900,570	+		LRK54_RS08730	0.43	-1.9
1,900,570	+		LRK54_RS08730	0.43	-1.8
1,900,570	+		LRK54_RS08730	0.43	+0.5
1,900,570	+		LRK54_RS08730	0.43	-1.6
1,900,570	+		LRK54_RS08730	0.43	-0.1
1,900,570	+		LRK54_RS08730	0.43	-0.5
1,900,570	+		LRK54_RS08730	0.43	-2.0
1,900,570	+		LRK54_RS08730	0.43	-1.1
1,900,570	+		LRK54_RS08730	0.43	-0.3
1,900,570	+		LRK54_RS08730	0.43	-0.9
1,900,570	+		LRK54_RS08730	0.43	-2.2
1,900,570	+		LRK54_RS08730	0.43	+0.8
1,900,570	+		LRK54_RS08730	0.43	-0.4
1,900,570	+		LRK54_RS08730	0.43	-0.5
1,900,570	+		LRK54_RS08730	0.43	-1.8
1,900,570	+		LRK54_RS08730	0.43	-1.9
1,900,570	+		LRK54_RS08730	0.43	+1.1
1,900,570	+		LRK54_RS08730	0.43	-0.9
1,900,570	+		LRK54_RS08730	0.43	-0.3
1,900,570	+		LRK54_RS08730	0.43	-0.6
1,900,570	+		LRK54_RS08730	0.43	-0.2
1,900,571	-		LRK54_RS08730	0.43	-1.6
1,900,571	-		LRK54_RS08730	0.43	-0.4
1,900,571	-		LRK54_RS08730	0.43	-2.4
1,900,571	-		LRK54_RS08730	0.43	-1.2
1,900,571	-		LRK54_RS08730	0.43	+2.1
1,900,571	-		LRK54_RS08730	0.43	+0.1
1,900,571	-		LRK54_RS08730	0.43	-1.3
1,900,571	-		LRK54_RS08730	0.43	-1.1
1,900,571	-		LRK54_RS08730	0.43	-0.4
1,900,571	-		LRK54_RS08730	0.43	-1.6
1,900,571	-		LRK54_RS08730	0.43	-2.0
1,900,571	-		LRK54_RS08730	0.43	-2.0
1,900,571	-		LRK54_RS08730	0.43	-0.5
1,900,571	-		LRK54_RS08730	0.43	+0.8
1,900,571	-		LRK54_RS08730	0.43	+0.5
1,900,571	-		LRK54_RS08730	0.43	-1.9
1,900,571	-		LRK54_RS08730	0.43	-1.5
1,900,571	-		LRK54_RS08730	0.43	-1.1
1,900,571	-		LRK54_RS08730	0.43	-1.9
1,900,571	-		LRK54_RS08730	0.43	-1.3
1,900,571	-		LRK54_RS08730	0.43	-1.1
1,900,571	-		LRK54_RS08730	0.43	+1.1
1,900,571	-		LRK54_RS08730	0.43	-0.8
1,900,571	-		LRK54_RS08730	0.43	-0.3
1,900,571	-		LRK54_RS08730	0.43	-0.3
1,900,571	-		LRK54_RS08730	0.43	-0.3
1,900,571	-		LRK54_RS08730	0.43	-0.8
1,900,571	-		LRK54_RS08730	0.43	-1.4
1,900,571	-		LRK54_RS08730	0.43	-0.8
1,900,571	-		LRK54_RS08730	0.43	-2.1
1,900,571	-		LRK54_RS08730	0.43	-1.8
1,900,571	-		LRK54_RS08730	0.43	-1.2
1,900,571	-		LRK54_RS08730	0.43	-0.5
1,900,571	-		LRK54_RS08730	0.43	-2.6
1,900,571	-		LRK54_RS08730	0.43	-1.1
1,900,651	+		LRK54_RS08730	0.53	-0.3
1,900,651	+		LRK54_RS08730	0.53	+0.2
1,900,651	+		LRK54_RS08730	0.53	+0.1
1,900,651	+		LRK54_RS08730	0.53	-1.3
1,900,651	+		LRK54_RS08730	0.53	+0.5
1,900,651	+		LRK54_RS08730	0.53	+0.1
1,900,651	+		LRK54_RS08730	0.53	-0.5
1,900,652	-		LRK54_RS08730	0.53	-1.3
1,900,652	-		LRK54_RS08730	0.53	-0.7
1,900,652	-		LRK54_RS08730	0.53	+1.1
1,900,652	-		LRK54_RS08730	0.53	-1.3
1,900,652	-		LRK54_RS08730	0.53	-1.5
1,900,652	-		LRK54_RS08730	0.53	+0.1
1,900,652	-		LRK54_RS08730	0.53	-1.1
1,900,652	-		LRK54_RS08730	0.53	+0.6
1,900,652	-		LRK54_RS08730	0.53	-2.2
1,900,652	-		LRK54_RS08730	0.53	-0.5
1,900,652	-		LRK54_RS08730	0.53	+1.2
1,900,652	-		LRK54_RS08730	0.53	-0.2
1,900,652	-		LRK54_RS08730	0.53	+1.1
1,900,652	-		LRK54_RS08730	0.53	-1.8
1,900,705	+		LRK54_RS08730	0.60	-1.1
1,900,705	+		LRK54_RS08730	0.60	-0.9
1,900,705	+		LRK54_RS08730	0.60	+0.5
1,900,705	+		LRK54_RS08730	0.60	-0.9
1,900,706	-		LRK54_RS08730	0.60	-0.5
1,900,706	-		LRK54_RS08730	0.60	-1.7
1,900,706	-		LRK54_RS08730	0.60	-3.6
1,900,706	-		LRK54_RS08730	0.60	-1.3
1,900,706	-		LRK54_RS08730	0.60	-2.4
1,900,706	-		LRK54_RS08730	0.60	-0.8
1,900,706	-		LRK54_RS08730	0.60	-2.3
1,900,810	+		LRK54_RS08730	0.73	-0.5
1,900,810	+		LRK54_RS08730	0.73	-1.9
1,900,810	+		LRK54_RS08730	0.73	-1.5
1,900,810	+		LRK54_RS08730	0.73	-3.3
1,900,810	+		LRK54_RS08730	0.73	-1.5
1,900,810	+		LRK54_RS08730	0.73	-2.4
1,900,810	+		LRK54_RS08730	0.73	-2.2
1,900,810	+		LRK54_RS08730	0.73	-1.4
1,900,810	+		LRK54_RS08730	0.73	-1.9
1,900,810	+		LRK54_RS08730	0.73	+2.1
1,900,810	+		LRK54_RS08730	0.73	-2.2
1,900,810	+		LRK54_RS08730	0.73	-0.6
1,900,810	+		LRK54_RS08730	0.73	-3.2
1,900,810	+		LRK54_RS08730	0.73	+1.1
1,900,810	+		LRK54_RS08730	0.73	+0.1
1,900,810	+		LRK54_RS08730	0.73	-2.0
1,900,810	+		LRK54_RS08730	0.73	-1.8
1,900,810	+		LRK54_RS08730	0.73	-1.9
1,900,810	+		LRK54_RS08730	0.73	+0.1
1,900,810	+		LRK54_RS08730	0.73	-1.8
1,900,810	+		LRK54_RS08730	0.73	-3.8
1,900,810	+		LRK54_RS08730	0.73	-0.8
1,900,810	+		LRK54_RS08730	0.73	-0.3
1,900,810	+		LRK54_RS08730	0.73	-1.6
1,900,810	+		LRK54_RS08730	0.73	-0.6
1,900,810	+		LRK54_RS08730	0.73	-0.4
1,900,810	+		LRK54_RS08730	0.73	-1.2
1,900,810	+		LRK54_RS08730	0.73	-0.3
1,900,810	+		LRK54_RS08730	0.73	+0.2
1,900,810	+		LRK54_RS08730	0.73	-1.1
1,900,810	+		LRK54_RS08730	0.73	+1.1
1,900,810	+		LRK54_RS08730	0.73	-1.3
1,900,810	+		LRK54_RS08730	0.73	-1.3
1,900,810	+		LRK54_RS08730	0.73	-1.6
1,900,810	+		LRK54_RS08730	0.73	-1.9
1,900,811	-		LRK54_RS08730	0.73	+0.1
1,900,811	-		LRK54_RS08730	0.73	-1.0
1,900,811	-		LRK54_RS08730	0.73	+1.1
1,900,811	-		LRK54_RS08730	0.73	-0.8
1,900,811	-		LRK54_RS08730	0.73	+1.1
1,900,811	-		LRK54_RS08730	0.73	+0.1
1,900,811	-		LRK54_RS08730	0.73	-1.2
1,900,811	-		LRK54_RS08730	0.73	-1.2
1,900,811	-		LRK54_RS08730	0.73	-0.3
1,900,811	-		LRK54_RS08730	0.73	-1.4
1,900,811	-		LRK54_RS08730	0.73	-1.1
1,900,811	-		LRK54_RS08730	0.73	-2.9
1,900,811	-		LRK54_RS08730	0.73	-3.2
1,900,811	-		LRK54_RS08730	0.73	-1.0
1,900,811	-		LRK54_RS08730	0.73	-3.7
1,900,811	-		LRK54_RS08730	0.73	-2.3
1,900,811	-		LRK54_RS08730	0.73	-1.3
1,900,811	-		LRK54_RS08730	0.73	-1.5
1,900,811	-		LRK54_RS08730	0.73	-0.5
1,900,811	-		LRK54_RS08730	0.73	+1.1
1,900,811	-		LRK54_RS08730	0.73	-0.5
1,900,811	-		LRK54_RS08730	0.73	-2.1
1,900,811	-		LRK54_RS08730	0.73	-1.5
1,900,811	-		LRK54_RS08730	0.73	-2.9
1,900,811	-		LRK54_RS08730	0.73	+0.5
1,900,811	-		LRK54_RS08730	0.73	+2.1
1,900,811	-		LRK54_RS08730	0.73	-1.4
1,900,811	-		LRK54_RS08730	0.73	+0.8
1,900,811	-		LRK54_RS08730	0.73	-1.5
1,900,811	-		LRK54_RS08730	0.73	-2.1
1,900,811	-		LRK54_RS08730	0.73	-0.8
1,900,811	-		LRK54_RS08730	0.73	-0.5
1,900,811	-		LRK54_RS08730	0.73	-0.5
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