Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07060

Experiment: R2A_PIPES with Cobalt chloride 256 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS07055 and LRK54_RS07060 are separated by 115 nucleotidesLRK54_RS07060 and LRK54_RS07065 are separated by 10 nucleotides LRK54_RS07055: LRK54_RS07055 - DNA primase, at 1,510,305 to 1,512,092 _RS07055 LRK54_RS07060: LRK54_RS07060 - DedA family protein, at 1,512,208 to 1,512,828 _RS07060 LRK54_RS07065: LRK54_RS07065 - bile acid:sodium symporter, at 1,512,839 to 1,513,834 _RS07065 Position (kb) 1512 1513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1512.253 kb on + strandat 1512.253 kb on + strandat 1512.253 kb on + strandat 1512.253 kb on + strandat 1512.254 kb on - strandat 1512.254 kb on - strandat 1512.254 kb on - strandat 1512.254 kb on - strandat 1512.436 kb on + strand, within LRK54_RS07060at 1512.436 kb on + strand, within LRK54_RS07060at 1512.437 kb on - strand, within LRK54_RS07060at 1512.493 kb on + strand, within LRK54_RS07060at 1512.493 kb on + strand, within LRK54_RS07060at 1512.493 kb on + strand, within LRK54_RS07060at 1512.493 kb on + strand, within LRK54_RS07060at 1512.494 kb on - strand, within LRK54_RS07060at 1512.524 kb on - strand, within LRK54_RS07060at 1512.524 kb on - strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.580 kb on + strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.581 kb on - strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.673 kb on + strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.674 kb on - strand, within LRK54_RS07060at 1512.682 kb on + strand, within LRK54_RS07060at 1512.682 kb on + strand, within LRK54_RS07060at 1512.682 kb on + strand, within LRK54_RS07060at 1512.682 kb on + strand, within LRK54_RS07060at 1512.683 kb on - strand, within LRK54_RS07060at 1512.683 kb on - strand, within LRK54_RS07060at 1512.683 kb on - strand, within LRK54_RS07060at 1512.683 kb on - strand, within LRK54_RS07060at 1512.776 kb on + strandat 1512.776 kb on + strandat 1512.776 kb on + strandat 1512.776 kb on + strandat 1512.776 kb on + strandat 1512.776 kb on + strandat 1512.777 kb on - strandat 1512.777 kb on - strandat 1512.777 kb on - strandat 1512.777 kb on - strandat 1512.777 kb on - strandat 1513.053 kb on + strand, within LRK54_RS07065at 1513.054 kb on - strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.071 kb on + strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.072 kb on - strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.136 kb on + strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.137 kb on - strand, within LRK54_RS07065at 1513.434 kb on - strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.466 kb on + strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.467 kb on - strand, within LRK54_RS07065at 1513.787 kb on + strandat 1513.787 kb on + strandat 1513.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 256 uM
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1,512,253 + -3.3
1,512,253 + -1.5
1,512,253 + -0.6
1,512,253 + -0.6
1,512,254 - -1.7
1,512,254 - -3.1
1,512,254 - +0.6
1,512,254 - +0.4
1,512,436 + LRK54_RS07060 0.37 -2.2
1,512,436 + LRK54_RS07060 0.37 +1.0
1,512,437 - LRK54_RS07060 0.37 -2.0
1,512,493 + LRK54_RS07060 0.46 -0.3
1,512,493 + LRK54_RS07060 0.46 +0.6
1,512,493 + LRK54_RS07060 0.46 -1.1
1,512,493 + LRK54_RS07060 0.46 -1.2
1,512,494 - LRK54_RS07060 0.46 -2.4
1,512,524 - LRK54_RS07060 0.51 +2.0
1,512,524 - LRK54_RS07060 0.51 -1.0
1,512,580 + LRK54_RS07060 0.60 -0.3
1,512,580 + LRK54_RS07060 0.60 -1.7
1,512,580 + LRK54_RS07060 0.60 -1.9
1,512,580 + LRK54_RS07060 0.60 +0.1
1,512,580 + LRK54_RS07060 0.60 -0.7
1,512,580 + LRK54_RS07060 0.60 +0.4
1,512,580 + LRK54_RS07060 0.60 -2.0
1,512,580 + LRK54_RS07060 0.60 -1.3
1,512,581 - LRK54_RS07060 0.60 -3.2
1,512,581 - LRK54_RS07060 0.60 -0.6
1,512,581 - LRK54_RS07060 0.60 -1.5
1,512,581 - LRK54_RS07060 0.60 -3.4
1,512,581 - LRK54_RS07060 0.60 -2.1
1,512,581 - LRK54_RS07060 0.60 -0.7
1,512,581 - LRK54_RS07060 0.60 -2.7
1,512,581 - LRK54_RS07060 0.60 -3.5
1,512,673 + LRK54_RS07060 0.75 -3.0
1,512,673 + LRK54_RS07060 0.75 +1.0
1,512,673 + LRK54_RS07060 0.75 -2.8
1,512,673 + LRK54_RS07060 0.75 -0.3
1,512,673 + LRK54_RS07060 0.75 -1.0
1,512,673 + LRK54_RS07060 0.75 -0.7
1,512,673 + LRK54_RS07060 0.75 -1.7
1,512,673 + LRK54_RS07060 0.75 -2.3
1,512,674 - LRK54_RS07060 0.75 -0.8
1,512,674 - LRK54_RS07060 0.75 -0.3
1,512,674 - LRK54_RS07060 0.75 -4.3
1,512,674 - LRK54_RS07060 0.75 -0.3
1,512,674 - LRK54_RS07060 0.75 -3.7
1,512,674 - LRK54_RS07060 0.75 -0.6
1,512,674 - LRK54_RS07060 0.75 -0.6
1,512,674 - LRK54_RS07060 0.75 -1.3
1,512,674 - LRK54_RS07060 0.75 -1.8
1,512,682 + LRK54_RS07060 0.76 -1.6
1,512,682 + LRK54_RS07060 0.76 -2.2
1,512,682 + LRK54_RS07060 0.76 -0.3
1,512,682 + LRK54_RS07060 0.76 -1.1
1,512,683 - LRK54_RS07060 0.76 -0.3
1,512,683 - LRK54_RS07060 0.76 -2.7
1,512,683 - LRK54_RS07060 0.76 -1.6
1,512,683 - LRK54_RS07060 0.76 -1.2
1,512,776 + -0.8
1,512,776 + -2.8
1,512,776 + -1.0
1,512,776 + -1.8
1,512,776 + -0.3
1,512,776 + -3.0
1,512,777 - -1.5
1,512,777 - +1.0
1,512,777 - -2.8
1,512,777 - -2.3
1,512,777 - -1.7
1,513,053 + LRK54_RS07065 0.21 +0.5
1,513,054 - LRK54_RS07065 0.22 +2.4
1,513,071 + LRK54_RS07065 0.23 +0.3
1,513,071 + LRK54_RS07065 0.23 +1.4
1,513,071 + LRK54_RS07065 0.23 -0.6
1,513,071 + LRK54_RS07065 0.23 -0.0
1,513,071 + LRK54_RS07065 0.23 -1.1
1,513,071 + LRK54_RS07065 0.23 -0.9
1,513,071 + LRK54_RS07065 0.23 -0.6
1,513,071 + LRK54_RS07065 0.23 +0.7
1,513,071 + LRK54_RS07065 0.23 +1.6
1,513,071 + LRK54_RS07065 0.23 -1.3
1,513,071 + LRK54_RS07065 0.23 -0.4
1,513,072 - LRK54_RS07065 0.23 -1.6
1,513,072 - LRK54_RS07065 0.23 +0.4
1,513,072 - LRK54_RS07065 0.23 -0.0
1,513,072 - LRK54_RS07065 0.23 -0.6
1,513,072 - LRK54_RS07065 0.23 -0.6
1,513,072 - LRK54_RS07065 0.23 -0.1
1,513,072 - LRK54_RS07065 0.23 -0.5
1,513,072 - LRK54_RS07065 0.23 -1.6
1,513,072 - LRK54_RS07065 0.23 -0.2
1,513,072 - LRK54_RS07065 0.23 +1.0
1,513,072 - LRK54_RS07065 0.23 -0.7
1,513,136 + LRK54_RS07065 0.30 -0.6
1,513,136 + LRK54_RS07065 0.30 -1.1
1,513,136 + LRK54_RS07065 0.30 -0.0
1,513,136 + LRK54_RS07065 0.30 +3.0
1,513,136 + LRK54_RS07065 0.30 +1.3
1,513,136 + LRK54_RS07065 0.30 -0.1
1,513,136 + LRK54_RS07065 0.30 -1.0
1,513,136 + LRK54_RS07065 0.30 -0.2
1,513,136 + LRK54_RS07065 0.30 -0.5
1,513,136 + LRK54_RS07065 0.30 +1.6
1,513,136 + LRK54_RS07065 0.30 -0.5
1,513,136 + LRK54_RS07065 0.30 +1.6
1,513,136 + LRK54_RS07065 0.30 +0.1
1,513,136 + LRK54_RS07065 0.30 +1.0
1,513,137 - LRK54_RS07065 0.30 -0.1
1,513,137 - LRK54_RS07065 0.30 -0.2
1,513,137 - LRK54_RS07065 0.30 -0.9
1,513,137 - LRK54_RS07065 0.30 +0.1
1,513,137 - LRK54_RS07065 0.30 -0.2
1,513,137 - LRK54_RS07065 0.30 -1.3
1,513,137 - LRK54_RS07065 0.30 -0.9
1,513,137 - LRK54_RS07065 0.30 -0.2
1,513,434 - LRK54_RS07065 0.60 -0.1
1,513,466 + LRK54_RS07065 0.63 +0.9
1,513,466 + LRK54_RS07065 0.63 +0.1
1,513,466 + LRK54_RS07065 0.63 -0.3
1,513,466 + LRK54_RS07065 0.63 +0.7
1,513,466 + LRK54_RS07065 0.63 -1.3
1,513,466 + LRK54_RS07065 0.63 -0.7
1,513,466 + LRK54_RS07065 0.63 -0.3
1,513,466 + LRK54_RS07065 0.63 +0.7
1,513,466 + LRK54_RS07065 0.63 +0.4
1,513,466 + LRK54_RS07065 0.63 +0.1
1,513,466 + LRK54_RS07065 0.63 +0.9
1,513,466 + LRK54_RS07065 0.63 +1.5
1,513,466 + LRK54_RS07065 0.63 +0.7
1,513,466 + LRK54_RS07065 0.63 -0.0
1,513,467 - LRK54_RS07065 0.63 +0.9
1,513,467 - LRK54_RS07065 0.63 -0.1
1,513,467 - LRK54_RS07065 0.63 -0.2
1,513,467 - LRK54_RS07065 0.63 -1.3
1,513,467 - LRK54_RS07065 0.63 -0.3
1,513,467 - LRK54_RS07065 0.63 +1.7
1,513,467 - LRK54_RS07065 0.63 -0.3
1,513,467 - LRK54_RS07065 0.63 -0.8
1,513,787 + -0.7
1,513,787 + +0.4
1,513,788 - -0.0

Or see this region's nucleotide sequence