Experiment: Columbia 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05910 and HMPREF1058_RS0119820 are separated by 140 nucleotides HMPREF1058_RS0119820 and HMPREF1058_RS05905 are separated by 264 nucleotides HMPREF1058_RS05905 and HMPREF1058_RS05900 overlap by 4 nucleotides
HMPREF1058_RS05910: HMPREF1058_RS05910 - galactose mutarotase, at 50,172 to 51,305
_RS05910
HMPREF1058_RS0119820: HMPREF1058_RS0119820 - hypothetical protein, at 51,446 to 51,675
_RS0119820
HMPREF1058_RS05905: HMPREF1058_RS05905 - sigma-70 family RNA polymerase sigma factor, at 51,940 to 52,485
_RS05905
HMPREF1058_RS05900: HMPREF1058_RS05900 - autotransporter outer membrane beta-barrel domain-containing protein, at 52,482 to 53,720
_RS05900
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.942 kb on + strand, within HMPREF1058_RS05910 at 50.942 kb on + strand, within HMPREF1058_RS05910 at 50.950 kb on - strand, within HMPREF1058_RS05910 at 50.989 kb on - strand, within HMPREF1058_RS05910 at 50.989 kb on - strand, within HMPREF1058_RS05910 at 51.032 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.101 kb on + strand, within HMPREF1058_RS05910 at 51.102 kb on - strand, within HMPREF1058_RS05910 at 51.122 kb on - strand, within HMPREF1058_RS05910 at 51.306 kb on - strand at 51.326 kb on + strand at 51.342 kb on - strand at 51.486 kb on + strand, within HMPREF1058_RS0119820 at 51.563 kb on - strand, within HMPREF1058_RS0119820 at 51.601 kb on + strand, within HMPREF1058_RS0119820 at 51.602 kb on - strand, within HMPREF1058_RS0119820 at 51.675 kb on + strand at 51.722 kb on + strand at 51.827 kb on + strand at 51.844 kb on + strand at 51.845 kb on - strand at 51.862 kb on - strand at 51.862 kb on - strand at 51.909 kb on + strand at 51.909 kb on + strand at 51.910 kb on - strand at 51.957 kb on - strand at 52.001 kb on + strand, within HMPREF1058_RS05905 at 52.003 kb on + strand, within HMPREF1058_RS05905 at 52.003 kb on + strand, within HMPREF1058_RS05905 at 52.004 kb on - strand, within HMPREF1058_RS05905 at 52.028 kb on - strand, within HMPREF1058_RS05905 at 52.046 kb on - strand, within HMPREF1058_RS05905 at 52.267 kb on - strand, within HMPREF1058_RS05905 at 52.314 kb on - strand, within HMPREF1058_RS05905 at 52.314 kb on - strand, within HMPREF1058_RS05905 at 52.369 kb on - strand, within HMPREF1058_RS05905 at 52.423 kb on + strand, within HMPREF1058_RS05905 at 52.437 kb on + strand at 52.439 kb on + strand at 52.462 kb on + strand at 52.466 kb on + strand at 52.597 kb on - strand at 52.600 kb on + strand at 52.601 kb on - strand at 52.632 kb on - strand, within HMPREF1058_RS05900 at 52.655 kb on - strand, within HMPREF1058_RS05900 at 52.674 kb on - strand, within HMPREF1058_RS05900 at 52.699 kb on + strand, within HMPREF1058_RS05900 at 52.700 kb on - strand, within HMPREF1058_RS05900 at 52.723 kb on + strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.874 kb on + strand, within HMPREF1058_RS05900 at 52.877 kb on - strand, within HMPREF1058_RS05900 at 52.890 kb on - strand, within HMPREF1058_RS05900 at 52.907 kb on + strand, within HMPREF1058_RS05900 at 52.930 kb on + strand, within HMPREF1058_RS05900 at 53.068 kb on + strand, within HMPREF1058_RS05900 at 53.093 kb on + strand, within HMPREF1058_RS05900 at 53.094 kb on - strand, within HMPREF1058_RS05900 at 53.098 kb on - strand, within HMPREF1058_RS05900 at 53.161 kb on - strand, within HMPREF1058_RS05900 at 53.214 kb on + strand, within HMPREF1058_RS05900 at 53.215 kb on - strand, within HMPREF1058_RS05900 at 53.225 kb on + strand, within HMPREF1058_RS05900 at 53.225 kb on + strand, within HMPREF1058_RS05900 at 53.226 kb on - strand, within HMPREF1058_RS05900 at 53.265 kb on - strand, within HMPREF1058_RS05900 at 53.302 kb on - strand, within HMPREF1058_RS05900 at 53.302 kb on - strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.330 kb on - strand, within HMPREF1058_RS05900 at 53.371 kb on - strand, within HMPREF1058_RS05900 at 53.371 kb on - strand, within HMPREF1058_RS05900 at 53.374 kb on + strand, within HMPREF1058_RS05900 at 53.375 kb on - strand, within HMPREF1058_RS05900 at 53.407 kb on - strand, within HMPREF1058_RS05900 at 53.409 kb on - strand, within HMPREF1058_RS05900
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1x (C) complex media remove 50,942 + HMPREF1058_RS05910 0.68 -0.3 50,942 + HMPREF1058_RS05910 0.68 +0.6 50,950 - HMPREF1058_RS05910 0.69 -0.9 50,989 - HMPREF1058_RS05910 0.72 -0.6 50,989 - HMPREF1058_RS05910 0.72 -0.0 51,032 + HMPREF1058_RS05910 0.76 -0.3 51,034 + HMPREF1058_RS05910 0.76 +0.2 51,034 + HMPREF1058_RS05910 0.76 +0.1 51,034 + HMPREF1058_RS05910 0.76 -0.3 51,101 + HMPREF1058_RS05910 0.82 -0.9 51,102 - HMPREF1058_RS05910 0.82 -0.2 51,122 - HMPREF1058_RS05910 0.84 +0.5 51,306 - +0.2 51,326 + +1.1 51,342 - -1.4 51,486 + HMPREF1058_RS0119820 0.17 -0.5 51,563 - HMPREF1058_RS0119820 0.51 -0.9 51,601 + HMPREF1058_RS0119820 0.67 +0.5 51,602 - HMPREF1058_RS0119820 0.68 -0.1 51,675 + -1.1 51,722 + +0.9 51,827 + +0.6 51,844 + +1.3 51,845 - -0.3 51,862 - -1.5 51,862 - -0.4 51,909 + -0.2 51,909 + -0.1 51,910 - +0.5 51,957 - -0.3 52,001 + HMPREF1058_RS05905 0.11 -1.7 52,003 + HMPREF1058_RS05905 0.12 +0.1 52,003 + HMPREF1058_RS05905 0.12 -0.8 52,004 - HMPREF1058_RS05905 0.12 -0.5 52,028 - HMPREF1058_RS05905 0.16 -1.5 52,046 - HMPREF1058_RS05905 0.19 +0.4 52,267 - HMPREF1058_RS05905 0.60 +0.0 52,314 - HMPREF1058_RS05905 0.68 -1.1 52,314 - HMPREF1058_RS05905 0.68 -0.3 52,369 - HMPREF1058_RS05905 0.79 -1.3 52,423 + HMPREF1058_RS05905 0.88 -0.1 52,437 + -0.6 52,439 + -0.5 52,462 + +0.5 52,466 + -1.2 52,597 - -0.0 52,600 + +0.7 52,601 - -0.9 52,632 - HMPREF1058_RS05900 0.12 -0.1 52,655 - HMPREF1058_RS05900 0.14 +0.1 52,674 - HMPREF1058_RS05900 0.15 -1.9 52,699 + HMPREF1058_RS05900 0.18 +0.5 52,700 - HMPREF1058_RS05900 0.18 -1.3 52,723 + HMPREF1058_RS05900 0.19 -0.4 52,872 - HMPREF1058_RS05900 0.31 -1.2 52,872 - HMPREF1058_RS05900 0.31 -0.6 52,872 - HMPREF1058_RS05900 0.31 +0.3 52,874 + HMPREF1058_RS05900 0.32 -0.4 52,877 - HMPREF1058_RS05900 0.32 -1.3 52,890 - HMPREF1058_RS05900 0.33 -0.1 52,907 + HMPREF1058_RS05900 0.34 +1.2 52,930 + HMPREF1058_RS05900 0.36 +0.1 53,068 + HMPREF1058_RS05900 0.47 +0.1 53,093 + HMPREF1058_RS05900 0.49 +0.0 53,094 - HMPREF1058_RS05900 0.49 +0.8 53,098 - HMPREF1058_RS05900 0.50 -0.8 53,161 - HMPREF1058_RS05900 0.55 -1.3 53,214 + HMPREF1058_RS05900 0.59 +0.1 53,215 - HMPREF1058_RS05900 0.59 -0.4 53,225 + HMPREF1058_RS05900 0.60 +0.1 53,225 + HMPREF1058_RS05900 0.60 -0.2 53,226 - HMPREF1058_RS05900 0.60 +2.1 53,265 - HMPREF1058_RS05900 0.63 +0.4 53,302 - HMPREF1058_RS05900 0.66 +0.3 53,302 - HMPREF1058_RS05900 0.66 -1.7 53,307 + HMPREF1058_RS05900 0.67 +2.1 53,307 + HMPREF1058_RS05900 0.67 +0.1 53,307 + HMPREF1058_RS05900 0.67 +0.3 53,330 - HMPREF1058_RS05900 0.68 +0.2 53,371 - HMPREF1058_RS05900 0.72 -1.5 53,371 - HMPREF1058_RS05900 0.72 +0.6 53,374 + HMPREF1058_RS05900 0.72 -0.4 53,375 - HMPREF1058_RS05900 0.72 +0.3 53,407 - HMPREF1058_RS05900 0.75 -0.8 53,409 - HMPREF1058_RS05900 0.75 +0.1
Or see this region's nucleotide sequence