Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17545

Experiment: R2A_PIPES with Cadmium chloride 16 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 16 uM
3,833,542	+		LRK54_RS17535	0.43	+0.9
3,833,542	+		LRK54_RS17535	0.43	+0.0
3,833,542	+		LRK54_RS17535	0.43	+0.9
3,833,543	-		LRK54_RS17535	0.44	+0.5
3,833,543	-		LRK54_RS17535	0.44	+1.0
3,833,543	-		LRK54_RS17535	0.44	+1.1
3,833,576	+		LRK54_RS17535	0.49	+1.0
3,833,593	+		LRK54_RS17535	0.52	-0.6
3,833,593	+		LRK54_RS17535	0.52	-0.3
3,833,593	+		LRK54_RS17535	0.52	-0.1
3,833,593	+		LRK54_RS17535	0.52	+0.9
3,833,593	+		LRK54_RS17535	0.52	-1.1
3,833,593	+		LRK54_RS17535	0.52	+1.5
3,833,594	-		LRK54_RS17535	0.52	+0.3
3,833,594	-		LRK54_RS17535	0.52	-0.9
3,833,594	-		LRK54_RS17535	0.52	+0.7
3,833,594	-		LRK54_RS17535	0.52	+1.6
3,833,594	-		LRK54_RS17535	0.52	+0.3
3,833,698	+		LRK54_RS17535	0.68	+3.5
3,833,698	+		LRK54_RS17535	0.68	+0.3
3,833,698	+		LRK54_RS17535	0.68	-0.2
3,833,811	+		LRK54_RS17535	0.87	-0.6
3,833,811	+		LRK54_RS17535	0.87	-1.7
3,833,811	+		LRK54_RS17535	0.87	+1.0
3,833,811	+		LRK54_RS17535	0.87	+0.9
3,833,811	+		LRK54_RS17535	0.87	-0.1
3,833,812	-		LRK54_RS17535	0.87	+2.5
3,833,812	-		LRK54_RS17535	0.87	+0.1
3,833,812	-		LRK54_RS17535	0.87	-0.0
3,833,812	-		LRK54_RS17535	0.87	-0.9
3,833,812	-		LRK54_RS17535	0.87	-0.7
3,833,812	-		LRK54_RS17535	0.87	-0.9
3,833,812	-		LRK54_RS17535	0.87	-0.0
3,833,812	-		LRK54_RS17535	0.87	+1.3
3,833,927	+				+1.3
3,833,928	-				+0.7
3,834,264	+		LRK54_RS17540	0.64	+1.9
3,834,264	+		LRK54_RS17540	0.64	+0.6
3,834,264	+		LRK54_RS17540	0.64	-0.3
3,834,264	+		LRK54_RS17540	0.64	-0.1
3,834,264	+		LRK54_RS17540	0.64	+0.8
3,834,264	+		LRK54_RS17540	0.64	+0.5
3,834,264	+		LRK54_RS17540	0.64	-0.4
3,834,264	+		LRK54_RS17540	0.64	-0.1
3,834,264	+		LRK54_RS17540	0.64	-0.3
3,834,264	+		LRK54_RS17540	0.64	-1.5
3,834,265	-		LRK54_RS17540	0.64	-0.1
3,834,265	-		LRK54_RS17540	0.64	-0.0
3,834,265	-		LRK54_RS17540	0.64	-0.2
3,834,265	-		LRK54_RS17540	0.64	-1.6
3,834,265	-		LRK54_RS17540	0.64	+0.5
3,834,265	-		LRK54_RS17540	0.64	+0.4
3,834,265	-		LRK54_RS17540	0.64	-0.4
3,834,265	-		LRK54_RS17540	0.64	+0.6
3,834,265	-		LRK54_RS17540	0.64	+0.4
3,834,265	-		LRK54_RS17540	0.64	+0.6
3,834,344	+		LRK54_RS17540	0.77	-0.1
3,834,344	+		LRK54_RS17540	0.77	-0.4
3,834,344	+		LRK54_RS17540	0.77	-1.9
3,834,344	+		LRK54_RS17540	0.77	+2.3
3,834,344	+		LRK54_RS17540	0.77	-0.2
3,834,345	-		LRK54_RS17540	0.78	-0.9
3,834,345	-		LRK54_RS17540	0.78	-0.1
3,834,345	-		LRK54_RS17540	0.78	-0.1
3,834,345	-		LRK54_RS17540	0.78	+1.0
3,834,345	-		LRK54_RS17540	0.78	-0.3
3,834,345	-		LRK54_RS17540	0.78	+0.9
3,834,345	-		LRK54_RS17540	0.78	+0.2
3,834,345	-		LRK54_RS17540	0.78	-1.4
3,834,345	-		LRK54_RS17540	0.78	+0.2
3,834,359	+		LRK54_RS17540	0.80	-0.9
3,834,360	-		LRK54_RS17540	0.80	+0.3
3,834,360	-		LRK54_RS17540	0.80	-0.6
3,834,370	+		LRK54_RS17540	0.82	+0.3
3,834,371	-		LRK54_RS17540	0.82	-0.1
3,834,473	+				-0.3
3,834,504	+				+1.0
3,834,504	+				-0.4
3,834,504	+				-0.7
3,834,504	+				+0.7
3,834,504	+				-0.4
3,834,504	+				-0.4
3,834,504	+				-0.3
3,834,504	+				+0.4
3,834,505	-				-0.9
3,834,505	-				+0.0
3,834,505	-				+0.6
3,834,669	+		LRK54_RS17545	0.17	+0.6
3,834,669	+		LRK54_RS17545	0.17	+0.2
3,834,669	+		LRK54_RS17545	0.17	+0.1
3,834,669	+		LRK54_RS17545	0.17	-0.3
3,834,669	+		LRK54_RS17545	0.17	-1.1
3,834,669	+		LRK54_RS17545	0.17	+0.0
3,834,669	+		LRK54_RS17545	0.17	+0.7
3,834,669	+		LRK54_RS17545	0.17	-0.6
3,834,669	+		LRK54_RS17545	0.17	+0.3
3,834,669	+		LRK54_RS17545	0.17	-1.1
3,834,670	-		LRK54_RS17545	0.17	+1.9
3,834,670	-		LRK54_RS17545	0.17	+0.9
3,834,670	-		LRK54_RS17545	0.17	+0.6
3,834,670	-		LRK54_RS17545	0.17	+0.8
3,834,670	-		LRK54_RS17545	0.17	+1.9
3,834,670	-		LRK54_RS17545	0.17	+0.2
3,834,670	-		LRK54_RS17545	0.17	+0.4
3,834,670	-		LRK54_RS17545	0.17	-0.3
3,834,670	-		LRK54_RS17545	0.17	+1.5
3,834,670	-		LRK54_RS17545	0.17	-0.3
3,834,670	-		LRK54_RS17545	0.17	+1.5
3,834,670	-		LRK54_RS17545	0.17	+0.7
3,834,670	-		LRK54_RS17545	0.17	-0.1
3,834,670	-		LRK54_RS17545	0.17	+1.2
3,834,773	+		LRK54_RS17545	0.28	+2.5
3,834,774	-		LRK54_RS17545	0.28	-0.9
3,834,948	+		LRK54_RS17545	0.45	-1.1
3,834,948	+		LRK54_RS17545	0.45	-0.7
3,834,948	+		LRK54_RS17545	0.45	+0.9
3,834,949	-		LRK54_RS17545	0.45	+1.4
3,834,949	-		LRK54_RS17545	0.45	+0.2
3,835,045	+		LRK54_RS17545	0.55	+0.7
3,835,203	+		LRK54_RS17545	0.71	-1.6
3,835,203	+		LRK54_RS17545	0.71	+1.9
3,835,203	+		LRK54_RS17545	0.71	+0.9
3,835,203	+		LRK54_RS17545	0.71	-0.8
3,835,203	+		LRK54_RS17545	0.71	+0.6
3,835,203	+		LRK54_RS17545	0.71	+0.6
3,835,203	+		LRK54_RS17545	0.71	+1.2
3,835,203	+		LRK54_RS17545	0.71	+0.2
3,835,203	+		LRK54_RS17545	0.71	+0.3
3,835,203	+		LRK54_RS17545	0.71	+0.2
3,835,203	+		LRK54_RS17545	0.71	+0.3
3,835,204	-		LRK54_RS17545	0.71	+1.3
3,835,204	-		LRK54_RS17545	0.71	-0.8
3,835,204	-		LRK54_RS17545	0.71	+1.4
3,835,204	-		LRK54_RS17545	0.71	-1.4
3,835,380	+		LRK54_RS17545	0.89	+1.2
3,835,380	+		LRK54_RS17545	0.89	+0.9
3,835,381	-		LRK54_RS17545	0.90	+0.7
3,835,381	-		LRK54_RS17545	0.90	-0.7
3,835,381	-		LRK54_RS17545	0.90	+0.5
3,835,381	-		LRK54_RS17545	0.90	+0.6
3,835,381	-		LRK54_RS17545	0.90	+0.6
3,835,381	-		LRK54_RS17545	0.90	+0.6
3,835,414	+				+0.4
3,835,414	+				-0.2
3,835,414	+				-0.1
3,835,415	-				+0.5
3,835,415	-				+0.2
3,835,415	-				-0.4
3,835,459	+				+0.1
3,835,459	+				+0.0
3,835,460	-				+0.0
3,835,460	-				+1.2
3,835,460	-				+1.9
3,835,460	-				-1.6
3,835,460	-				+1.3
3,835,460	-				+0.3
3,835,460	-				-2.3
3,835,460	-				+0.1
3,835,460	-				-0.8
3,835,486	+				-2.9
3,835,486	+				-0.4
3,835,486	+				+0.1
3,835,486	+				-0.4
3,835,486	+				+0.1
3,835,486	+				-0.4
3,835,487	-				-0.1
3,835,487	-				+0.3
3,835,487	-				-0.1
3,835,487	-				-2.0
3,835,487	-				+0.1
3,835,505	+				+0.3
3,835,506	-				+0.4
3,835,606	+		LRK54_RS17550	0.16	-0.4
3,835,607	-		LRK54_RS17550	0.16	-0.3
3,835,741	+		LRK54_RS17550	0.57	-1.7
3,835,741	+		LRK54_RS17550	0.57	-1.2
3,835,741	+		LRK54_RS17550	0.57	-1.3
3,835,741	+		LRK54_RS17550	0.57	-1.0
3,835,741	+		LRK54_RS17550	0.57	-1.2
3,835,741	+		LRK54_RS17550	0.57	+0.3
3,835,742	-		LRK54_RS17550	0.57	-1.3
3,835,742	-		LRK54_RS17550	0.57	-1.7
3,835,742	-		LRK54_RS17550	0.57	-2.2
3,835,932	+				-2.2
3,835,932	+				-0.1
3,835,932	+				-5.2
3,835,932	+				-2.4
3,835,932	+				+0.1
3,835,933	-				-3.2
3,835,933	-				+0.9
3,835,933	-				-2.0
3,836,067	-				-1.3
3,836,096	-				-1.9
3,836,096	-				-1.9
3,836,241	+		LRK54_RS17555	0.12	-4.2
3,836,241	+		LRK54_RS17555	0.12	-2.9
3,836,241	+		LRK54_RS17555	0.12	-1.5
3,836,241	+		LRK54_RS17555	0.12	-3.1
3,836,241	+		LRK54_RS17555	0.12	-0.4
3,836,241	+		LRK54_RS17555	0.12	-2.0
3,836,241	+		LRK54_RS17555	0.12	-2.3
3,836,241	+		LRK54_RS17555	0.12	-3.7
3,836,242	-		LRK54_RS17555	0.12	-0.9
3,836,242	-		LRK54_RS17555	0.12	-4.5
3,836,242	-		LRK54_RS17555	0.12	-5.6
3,836,242	-		LRK54_RS17555	0.12	-0.4
3,836,242	-		LRK54_RS17555	0.12	+0.3
3,836,242	-		LRK54_RS17555	0.12	-1.7
3,836,242	-		LRK54_RS17555	0.12	-2.9
3,836,340	+		LRK54_RS17555	0.15	-2.0
3,836,340	+		LRK54_RS17555	0.15	-4.0
3,836,341	-		LRK54_RS17555	0.15	-2.8
3,836,439	+		LRK54_RS17555	0.18	-2.9
3,836,439	+		LRK54_RS17555	0.18	-0.7
3,836,439	+		LRK54_RS17555	0.18	-0.9
3,836,440	-		LRK54_RS17555	0.18	-0.7
3,836,440	-		LRK54_RS17555	0.18	-5.2
3,836,442	+		LRK54_RS17555	0.18	-1.1
3,836,442	+		LRK54_RS17555	0.18	-1.6
3,836,443	-		LRK54_RS17555	0.18	-4.1
3,836,443	-		LRK54_RS17555	0.18	-1.9