Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11935

Experiment: R2A_PIPES with Cadmium chloride 16 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 16 uM
2,645,493	+		LRK54_RS11930	0.35	+2.1
2,645,493	+		LRK54_RS11930	0.35	-0.5
2,645,493	+		LRK54_RS11930	0.35	-0.2
2,645,493	+		LRK54_RS11930	0.35	+1.1
2,645,493	+		LRK54_RS11930	0.35	-0.5
2,645,494	-		LRK54_RS11930	0.36	+2.1
2,645,688	+		LRK54_RS11930	0.51	-0.1
2,645,689	-		LRK54_RS11930	0.51	-0.8
2,645,853	+		LRK54_RS11930	0.64	+0.1
2,645,853	+		LRK54_RS11930	0.64	-0.7
2,645,853	+		LRK54_RS11930	0.64	-0.3
2,645,853	+		LRK54_RS11930	0.64	-0.2
2,645,853	+		LRK54_RS11930	0.64	-0.2
2,645,853	+		LRK54_RS11930	0.64	-2.5
2,645,853	+		LRK54_RS11930	0.64	-0.9
2,645,853	+		LRK54_RS11930	0.64	-0.5
2,645,853	+		LRK54_RS11930	0.64	-0.7
2,645,854	-		LRK54_RS11930	0.64	-0.4
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	-0.9
2,645,854	-		LRK54_RS11930	0.64	+1.2
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	+1.9
2,645,854	-		LRK54_RS11930	0.64	-2.6
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	-0.2
2,645,854	-		LRK54_RS11930	0.64	-0.1
2,645,854	-		LRK54_RS11930	0.64	+0.4
2,646,145	+		LRK54_RS11930	0.87	+1.3
2,646,146	-		LRK54_RS11930	0.87	+0.1
2,646,146	-		LRK54_RS11930	0.87	+0.0
2,646,195	+				+1.5
2,646,195	+				-1.1
2,646,195	+				+0.7
2,646,195	+				-2.3
2,646,195	+				+1.1
2,646,195	+				-0.6
2,646,195	+				+0.5
2,646,195	+				-0.9
2,646,196	-				-0.4
2,646,196	-				+0.9
2,646,196	-				+1.5
2,646,196	-				-0.5
2,646,196	-				-2.4
2,646,196	-				+0.7
2,646,196	-				-0.9
2,646,196	-				-1.0
2,646,196	-				+0.1
2,646,196	-				-0.5
2,646,196	-				-0.2
2,646,196	-				+2.1
2,646,196	-				+0.3
2,646,303	+				+0.7
2,646,304	-				+0.5
2,646,304	-				-1.0
2,646,304	-				-0.4
2,646,304	-				-2.6
2,646,304	-				-2.2
2,646,304	-				+2.1
2,646,304	-				+3.5
2,646,325	+				-0.8
2,646,325	+				+0.1
2,646,325	+				+0.5
2,646,325	+				+1.1
2,646,325	+				-0.1
2,646,325	+				-0.4
2,646,325	+				-0.5
2,646,325	+				-1.0
2,646,325	+				-2.2
2,646,325	+				+0.4
2,646,325	+				+0.2
2,646,325	+				-0.4
2,646,325	+				+1.4
2,646,325	+				-0.5
2,646,326	-				+0.1
2,646,326	-				-2.1
2,646,326	-				-1.3
2,646,326	-				-1.4
2,646,326	-				+0.1
2,646,326	-				+0.5
2,646,326	-				-1.8
2,646,326	-				-0.0
2,646,326	-				+0.3
2,646,326	-				+0.2
2,646,326	-				+3.1
2,646,326	-				-0.1
2,646,490	+				-0.4
2,646,490	+				+0.2
2,646,490	+				+0.2
2,646,490	+				+2.1
2,646,490	+				+0.5
2,646,490	+				+0.7
2,646,491	-				-0.8
2,646,491	-				-0.8
2,646,491	-				-0.5
2,646,491	-				+0.2
2,646,491	-				+0.3
2,646,491	-				+0.9
2,646,588	+		LRK54_RS11935	0.20	-1.1
2,646,589	-		LRK54_RS11935	0.20	-1.1
2,646,589	-		LRK54_RS11935	0.20	-0.9
2,646,733	+		LRK54_RS11935	0.41	-1.0
2,646,733	+		LRK54_RS11935	0.41	-0.1
2,646,733	+		LRK54_RS11935	0.41	-0.5
2,646,733	+		LRK54_RS11935	0.41	-0.4
2,646,733	+		LRK54_RS11935	0.41	-0.9
2,646,733	+		LRK54_RS11935	0.41	+0.6
2,646,734	-		LRK54_RS11935	0.41	-1.1
2,646,734	-		LRK54_RS11935	0.41	+0.1
2,646,734	-		LRK54_RS11935	0.41	-0.6
2,646,734	-		LRK54_RS11935	0.41	+1.1
2,646,734	-		LRK54_RS11935	0.41	-2.6
2,646,734	-		LRK54_RS11935	0.41	-0.0
2,647,079	-				+0.5
2,647,089	+				+1.9
2,647,089	+				-0.3
2,647,089	+				+1.4
2,647,089	+				-0.4
2,647,089	+				-0.3
2,647,090	-				+0.5
2,647,090	-				+0.1
2,647,090	-				+0.3
2,647,090	-				+0.5
2,647,154	+				+1.0
2,647,154	+				-1.4
2,647,154	+				+0.2
2,647,154	+				+0.2
2,647,154	+				-0.9
2,647,154	+				-2.2
2,647,154	+				-0.4
2,647,154	+				-0.2
2,647,154	+				+0.3
2,647,154	+				-0.7
2,647,154	+				-0.2
2,647,155	-				+0.1
2,647,155	-				-2.7
2,647,155	-				-0.4
2,647,155	-				+0.5
2,647,155	-				-0.9
2,647,155	-				+0.0
2,647,155	-				-0.9
2,647,155	-				-0.4
2,647,155	-				+1.7
2,647,155	-				-0.2
2,647,155	-				-2.0
2,647,155	-				-0.8
2,647,155	-				-1.3
2,647,155	-				-1.4
2,647,381	-		LRK54_RS11940	0.20	-2.3
2,647,427	+		LRK54_RS11940	0.24	+0.6
2,647,428	-		LRK54_RS11940	0.24	-0.6
2,647,428	-		LRK54_RS11940	0.24	-1.4
2,647,428	-		LRK54_RS11940	0.24	-0.4
2,647,475	+		LRK54_RS11940	0.28	+0.1
2,647,475	+		LRK54_RS11940	0.28	+0.5
2,647,475	+		LRK54_RS11940	0.28	-2.2
2,647,476	-		LRK54_RS11940	0.28	-1.0
2,647,476	-		LRK54_RS11940	0.28	-0.3
2,647,476	-		LRK54_RS11940	0.28	-0.5
2,647,476	-		LRK54_RS11940	0.28	-1.2
2,647,476	-		LRK54_RS11940	0.28	-0.2
2,647,736	+		LRK54_RS11940	0.50	+0.1
2,647,736	+		LRK54_RS11940	0.50	-0.7
2,647,736	+		LRK54_RS11940	0.50	-0.4
2,647,736	+		LRK54_RS11940	0.50	+2.7
2,647,736	+		LRK54_RS11940	0.50	-0.5
2,647,736	+		LRK54_RS11940	0.50	-0.9
2,647,736	+		LRK54_RS11940	0.50	-0.4
2,647,736	+		LRK54_RS11940	0.50	-0.2
2,647,737	-		LRK54_RS11940	0.50	-0.5
2,647,737	-		LRK54_RS11940	0.50	-1.7
2,647,737	-		LRK54_RS11940	0.50	-1.4
2,647,737	-		LRK54_RS11940	0.50	-1.2
2,647,737	-		LRK54_RS11940	0.50	+0.4
2,647,737	-		LRK54_RS11940	0.50	-0.2
2,647,737	-		LRK54_RS11940	0.50	+0.7
2,647,737	-		LRK54_RS11940	0.50	+1.3
2,647,757	+		LRK54_RS11940	0.52	-0.7
2,647,757	+		LRK54_RS11940	0.52	-0.5
2,647,757	+		LRK54_RS11940	0.52	-1.2
2,647,757	+		LRK54_RS11940	0.52	+1.6
2,647,758	-		LRK54_RS11940	0.52	-0.6
2,647,758	-		LRK54_RS11940	0.52	+3.7
2,647,758	-		LRK54_RS11940	0.52	-0.2
2,647,758	-		LRK54_RS11940	0.52	+2.1
2,647,758	-		LRK54_RS11940	0.52	-1.0
2,647,758	-		LRK54_RS11940	0.52	-0.2
2,647,758	-		LRK54_RS11940	0.52	+0.2
2,647,773	+		LRK54_RS11940	0.54	-0.9
2,647,773	+		LRK54_RS11940	0.54	-1.8
2,647,773	+		LRK54_RS11940	0.54	+1.0
2,647,773	+		LRK54_RS11940	0.54	+1.1
2,647,773	+		LRK54_RS11940	0.54	-0.7
2,647,773	+		LRK54_RS11940	0.54	+0.3
2,647,773	+		LRK54_RS11940	0.54	+0.5
2,647,774	-		LRK54_RS11940	0.54	+0.5
2,647,774	-		LRK54_RS11940	0.54	-1.1
2,647,774	-		LRK54_RS11940	0.54	+0.2
2,647,774	-		LRK54_RS11940	0.54	-0.7
2,647,774	-		LRK54_RS11940	0.54	+0.7
2,647,781	+		LRK54_RS11940	0.54	-0.5
2,647,781	+		LRK54_RS11940	0.54	-0.0
2,647,781	+		LRK54_RS11940	0.54	+0.1
2,647,781	+		LRK54_RS11940	0.54	-0.8
2,647,781	+		LRK54_RS11940	0.54	+0.0
2,647,781	+		LRK54_RS11940	0.54	-0.2
2,647,781	+		LRK54_RS11940	0.54	-0.4
2,647,781	+		LRK54_RS11940	0.54	-0.2
2,647,781	+		LRK54_RS11940	0.54	+1.0
2,647,781	+		LRK54_RS11940	0.54	-1.2
2,647,782	-		LRK54_RS11940	0.54	+1.3
2,647,782	-		LRK54_RS11940	0.54	+0.4
2,647,782	-		LRK54_RS11940	0.54	+0.7
2,647,782	-		LRK54_RS11940	0.54	+0.0
2,647,782	-		LRK54_RS11940	0.54	-0.4
2,647,782	-		LRK54_RS11940	0.54	+0.0
2,647,782	-		LRK54_RS11940	0.54	-1.5
2,647,782	-		LRK54_RS11940	0.54	-0.7
2,647,782	-		LRK54_RS11940	0.54	+1.6
2,647,782	-		LRK54_RS11940	0.54	+0.4
2,647,782	-		LRK54_RS11940	0.54	+0.4
2,647,821	+		LRK54_RS11940	0.58	-1.5