Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20480

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15305 and HMPREF1058_RS15300 are separated by 38 nucleotidesHMPREF1058_RS15300 and HMPREF1058_RS20480 are separated by 312 nucleotidesHMPREF1058_RS20480 and HMPREF1058_RS20485 are separated by 141 nucleotidesHMPREF1058_RS20485 and HMPREF1058_RS15290 are separated by 205 nucleotides HMPREF1058_RS15305: HMPREF1058_RS15305 - hypothetical protein, at 955,954 to 957,402 _RS15305 HMPREF1058_RS15300: HMPREF1058_RS15300 - DUF3575 domain-containing protein, at 957,441 to 958,037 _RS15300 HMPREF1058_RS20480: HMPREF1058_RS20480 - site-specific integrase, at 958,350 to 958,710 _RS20480 HMPREF1058_RS20485: HMPREF1058_RS20485 - mobilization protein, at 958,852 to 959,061 _RS20485 HMPREF1058_RS15290: HMPREF1058_RS15290 - hypothetical protein, at 959,267 to 960,478 _RS15290 Position (kb) 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 957.351 kb on - strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.353 kb on - strandat 957.353 kb on - strandat 957.353 kb on - strandat 957.356 kb on + strandat 957.356 kb on + strandat 957.380 kb on - strandat 957.380 kb on - strandat 957.383 kb on + strandat 957.384 kb on - strandat 957.384 kb on - strandat 957.386 kb on + strandat 957.387 kb on - strandat 957.423 kb on - strandat 957.423 kb on - strandat 957.424 kb on + strandat 957.424 kb on + strandat 957.447 kb on - strandat 957.450 kb on + strandat 957.453 kb on - strandat 957.453 kb on - strandat 957.454 kb on + strandat 957.479 kb on + strandat 957.479 kb on + strandat 957.480 kb on - strandat 957.509 kb on + strand, within HMPREF1058_RS15300at 957.510 kb on - strand, within HMPREF1058_RS15300at 957.530 kb on + strand, within HMPREF1058_RS15300at 957.547 kb on + strand, within HMPREF1058_RS15300at 957.548 kb on - strand, within HMPREF1058_RS15300at 957.640 kb on + strand, within HMPREF1058_RS15300at 957.655 kb on + strand, within HMPREF1058_RS15300at 957.696 kb on - strand, within HMPREF1058_RS15300at 957.708 kb on + strand, within HMPREF1058_RS15300at 957.717 kb on + strand, within HMPREF1058_RS15300at 957.718 kb on - strand, within HMPREF1058_RS15300at 957.785 kb on - strand, within HMPREF1058_RS15300at 957.790 kb on - strand, within HMPREF1058_RS15300at 958.086 kb on + strandat 958.146 kb on - strandat 958.146 kb on - strandat 958.284 kb on - strandat 958.284 kb on - strandat 958.307 kb on - strandat 958.317 kb on + strandat 958.318 kb on - strandat 958.321 kb on + strandat 958.349 kb on + strandat 958.426 kb on + strand, within HMPREF1058_RS20480at 958.427 kb on - strand, within HMPREF1058_RS20480at 958.427 kb on - strand, within HMPREF1058_RS20480at 958.429 kb on - strand, within HMPREF1058_RS20480at 958.434 kb on + strand, within HMPREF1058_RS20480at 958.435 kb on - strand, within HMPREF1058_RS20480at 958.469 kb on - strand, within HMPREF1058_RS20480at 958.585 kb on + strand, within HMPREF1058_RS20480at 958.586 kb on + strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.607 kb on - strand, within HMPREF1058_RS20480at 958.627 kb on - strand, within HMPREF1058_RS20480at 958.726 kb on + strandat 958.727 kb on - strandat 958.728 kb on + strandat 958.728 kb on + strandat 958.729 kb on - strandat 958.729 kb on - strandat 958.783 kb on + strandat 958.873 kb on - strand, within HMPREF1058_RS20485at 958.950 kb on + strand, within HMPREF1058_RS20485at 958.951 kb on - strand, within HMPREF1058_RS20485at 959.158 kb on - strandat 959.172 kb on - strandat 959.172 kb on - strandat 959.175 kb on + strandat 959.176 kb on - strandat 959.241 kb on - strandat 959.241 kb on - strandat 959.298 kb on + strandat 959.414 kb on + strand, within HMPREF1058_RS15290at 959.446 kb on + strand, within HMPREF1058_RS15290at 959.446 kb on + strand, within HMPREF1058_RS15290at 959.446 kb on + strand, within HMPREF1058_RS15290at 959.449 kb on - strand, within HMPREF1058_RS15290at 959.503 kb on + strand, within HMPREF1058_RS15290at 959.507 kb on + strand, within HMPREF1058_RS15290at 959.508 kb on - strand, within HMPREF1058_RS15290at 959.508 kb on - strand, within HMPREF1058_RS15290at 959.594 kb on + strand, within HMPREF1058_RS15290at 959.642 kb on - strand, within HMPREF1058_RS15290at 959.642 kb on - strand, within HMPREF1058_RS15290at 959.642 kb on - strand, within HMPREF1058_RS15290at 959.642 kb on - strand, within HMPREF1058_RS15290at 959.674 kb on + strand, within HMPREF1058_RS15290

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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957,351 - +1.1
957,352 + -2.6
957,352 + -0.1
957,352 + -0.8
957,352 + +0.1
957,352 + -0.3
957,352 + -1.8
957,352 + -1.1
957,353 - +3.7
957,353 - +2.4
957,353 - +2.3
957,356 + +0.1
957,356 + -0.2
957,380 - +2.7
957,380 - +1.4
957,383 + -0.1
957,384 - +2.5
957,384 - +0.9
957,386 + +0.7
957,387 - +3.1
957,423 - +1.0
957,423 - -0.7
957,424 + -1.1
957,424 + -0.0
957,447 - -0.4
957,450 + -0.1
957,453 - +0.9
957,453 - -1.3
957,454 + -0.1
957,479 + -0.7
957,479 + -0.7
957,480 - -0.4
957,509 + HMPREF1058_RS15300 0.11 -0.4
957,510 - HMPREF1058_RS15300 0.12 -2.8
957,530 + HMPREF1058_RS15300 0.15 -0.9
957,547 + HMPREF1058_RS15300 0.18 -0.3
957,548 - HMPREF1058_RS15300 0.18 -2.3
957,640 + HMPREF1058_RS15300 0.33 +0.4
957,655 + HMPREF1058_RS15300 0.36 +1.1
957,696 - HMPREF1058_RS15300 0.43 +0.5
957,708 + HMPREF1058_RS15300 0.45 +0.5
957,717 + HMPREF1058_RS15300 0.46 -0.5
957,718 - HMPREF1058_RS15300 0.46 +1.1
957,785 - HMPREF1058_RS15300 0.58 -1.9
957,790 - HMPREF1058_RS15300 0.58 -2.2
958,086 + -0.7
958,146 - -1.1
958,146 - -2.5
958,284 - +0.5
958,284 - +1.7
958,307 - +0.0
958,317 + +0.8
958,318 - +4.5
958,321 + +0.2
958,349 + +0.1
958,426 + HMPREF1058_RS20480 0.21 -0.3
958,427 - HMPREF1058_RS20480 0.21 +2.4
958,427 - HMPREF1058_RS20480 0.21 +2.5
958,429 - HMPREF1058_RS20480 0.22 +0.7
958,434 + HMPREF1058_RS20480 0.23 -0.2
958,435 - HMPREF1058_RS20480 0.24 +1.6
958,469 - HMPREF1058_RS20480 0.33 +0.9
958,585 + HMPREF1058_RS20480 0.65 +1.2
958,586 + HMPREF1058_RS20480 0.65 -0.2
958,587 - HMPREF1058_RS20480 0.66 +0.4
958,587 - HMPREF1058_RS20480 0.66 +0.7
958,587 - HMPREF1058_RS20480 0.66 +1.5
958,607 - HMPREF1058_RS20480 0.71 +2.0
958,627 - HMPREF1058_RS20480 0.77 +1.3
958,726 + -0.5
958,727 - -1.2
958,728 + -0.1
958,728 + +1.0
958,729 - -0.3
958,729 - +0.1
958,783 + +0.3
958,873 - HMPREF1058_RS20485 0.10 +0.8
958,950 + HMPREF1058_RS20485 0.47 -0.8
958,951 - HMPREF1058_RS20485 0.47 +0.4
959,158 - +0.8
959,172 - -0.7
959,172 - +0.2
959,175 + -0.2
959,176 - -0.3
959,241 - -0.8
959,241 - -0.7
959,298 + -0.5
959,414 + HMPREF1058_RS15290 0.12 -1.7
959,446 + HMPREF1058_RS15290 0.15 -1.1
959,446 + HMPREF1058_RS15290 0.15 +0.0
959,446 + HMPREF1058_RS15290 0.15 +1.3
959,449 - HMPREF1058_RS15290 0.15 +0.3
959,503 + HMPREF1058_RS15290 0.19 +0.2
959,507 + HMPREF1058_RS15290 0.20 -0.2
959,508 - HMPREF1058_RS15290 0.20 +0.6
959,508 - HMPREF1058_RS15290 0.20 +0.7
959,594 + HMPREF1058_RS15290 0.27 -0.2
959,642 - HMPREF1058_RS15290 0.31 -1.2
959,642 - HMPREF1058_RS15290 0.31 -0.4
959,642 - HMPREF1058_RS15290 0.31 +0.3
959,642 - HMPREF1058_RS15290 0.31 +1.1
959,674 + HMPREF1058_RS15290 0.34 -0.3

Or see this region's nucleotide sequence