Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18775 and HMPREF1058_RS18770 are separated by 32 nucleotides HMPREF1058_RS18770 and HMPREF1058_RS20375 are separated by 123 nucleotides HMPREF1058_RS20375 and HMPREF1058_RS18765 are separated by 31 nucleotides
HMPREF1058_RS18775: HMPREF1058_RS18775 - S9 family peptidase, at 74,580 to 77,294
_RS18775
HMPREF1058_RS18770: HMPREF1058_RS18770 - hypothetical protein, at 77,327 to 77,563
_RS18770
HMPREF1058_RS20375: HMPREF1058_RS20375 - hypothetical protein, at 77,687 to 77,914
_RS20375
HMPREF1058_RS18765: HMPREF1058_RS18765 - formate--tetrahydrofolate ligase, at 77,946 to 79,613
_RS18765
Position (kb) 77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 76.377 kb on - strand, within HMPREF1058_RS18775 at 76.377 kb on - strand, within HMPREF1058_RS18775 at 76.644 kb on + strand, within HMPREF1058_RS18775 at 76.723 kb on + strand, within HMPREF1058_RS18775 at 77.024 kb on - strand at 77.096 kb on - strand at 77.263 kb on - strand at 77.263 kb on - strand at 77.283 kb on + strand at 77.284 kb on - strand at 77.339 kb on - strand at 77.382 kb on - strand, within HMPREF1058_RS18770 at 77.506 kb on + strand, within HMPREF1058_RS18770 at 77.525 kb on - strand, within HMPREF1058_RS18770 at 77.594 kb on - strand at 77.633 kb on + strand at 77.650 kb on - strand at 77.650 kb on - strand at 77.651 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.661 kb on - strand at 77.680 kb on - strand at 77.729 kb on - strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.802 kb on + strand, within HMPREF1058_RS20375 at 77.802 kb on + strand, within HMPREF1058_RS20375 at 77.803 kb on - strand, within HMPREF1058_RS20375 at 77.807 kb on + strand, within HMPREF1058_RS20375 at 77.822 kb on - strand, within HMPREF1058_RS20375 at 77.837 kb on - strand, within HMPREF1058_RS20375 at 77.962 kb on - strand at 77.985 kb on - strand at 78.189 kb on + strand, within HMPREF1058_RS18765 at 78.194 kb on + strand, within HMPREF1058_RS18765 at 78.226 kb on + strand, within HMPREF1058_RS18765 at 78.226 kb on + strand, within HMPREF1058_RS18765 at 78.227 kb on - strand, within HMPREF1058_RS18765 at 78.227 kb on - strand, within HMPREF1058_RS18765 at 78.230 kb on + strand, within HMPREF1058_RS18765 at 78.231 kb on - strand, within HMPREF1058_RS18765 at 78.248 kb on - strand, within HMPREF1058_RS18765 at 78.255 kb on - strand, within HMPREF1058_RS18765 at 78.276 kb on - strand, within HMPREF1058_RS18765 at 78.307 kb on + strand, within HMPREF1058_RS18765 at 78.445 kb on + strand, within HMPREF1058_RS18765 at 78.445 kb on + strand, within HMPREF1058_RS18765 at 78.446 kb on - strand, within HMPREF1058_RS18765
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 76,377 - HMPREF1058_RS18775 0.66 +2.1 76,377 - HMPREF1058_RS18775 0.66 +1.5 76,644 + HMPREF1058_RS18775 0.76 +2.9 76,723 + HMPREF1058_RS18775 0.79 +2.0 77,024 - +1.4 77,096 - +2.1 77,263 - +2.6 77,263 - +2.4 77,283 + +1.7 77,284 - +2.2 77,339 - +1.4 77,382 - HMPREF1058_RS18770 0.23 -0.9 77,506 + HMPREF1058_RS18770 0.76 +1.6 77,525 - HMPREF1058_RS18770 0.84 +1.4 77,594 - -1.7 77,633 + -0.6 77,650 - -4.2 77,650 - -0.8 77,651 + +0.6 77,660 + +0.9 77,660 + +0.9 77,660 + +0.0 77,660 + +0.7 77,661 - -1.7 77,680 - -2.8 77,729 - HMPREF1058_RS20375 0.18 -0.6 77,730 + HMPREF1058_RS20375 0.19 +0.8 77,730 + HMPREF1058_RS20375 0.19 +0.2 77,730 + HMPREF1058_RS20375 0.19 +2.4 77,802 + HMPREF1058_RS20375 0.50 -0.1 77,802 + HMPREF1058_RS20375 0.50 -1.8 77,803 - HMPREF1058_RS20375 0.51 -0.6 77,807 + HMPREF1058_RS20375 0.53 +0.6 77,822 - HMPREF1058_RS20375 0.59 -1.6 77,837 - HMPREF1058_RS20375 0.66 -2.5 77,962 - -3.5 77,985 - -4.2 78,189 + HMPREF1058_RS18765 0.15 +0.8 78,194 + HMPREF1058_RS18765 0.15 -2.9 78,226 + HMPREF1058_RS18765 0.17 +0.3 78,226 + HMPREF1058_RS18765 0.17 -0.4 78,227 - HMPREF1058_RS18765 0.17 +1.4 78,227 - HMPREF1058_RS18765 0.17 -2.5 78,230 + HMPREF1058_RS18765 0.17 +0.5 78,231 - HMPREF1058_RS18765 0.17 -1.0 78,248 - HMPREF1058_RS18765 0.18 -0.9 78,255 - HMPREF1058_RS18765 0.19 -0.1 78,276 - HMPREF1058_RS18765 0.20 -0.8 78,307 + HMPREF1058_RS18765 0.22 +0.3 78,445 + HMPREF1058_RS18765 0.30 +0.6 78,445 + HMPREF1058_RS18765 0.30 +0.8 78,446 - HMPREF1058_RS18765 0.30 -0.7
Or see this region's nucleotide sequence