Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18755 and HMPREF1058_RS18750 are separated by 5 nucleotides HMPREF1058_RS18750 and HMPREF1058_RS18745 overlap by 17 nucleotides
HMPREF1058_RS18755: HMPREF1058_RS18755 - hypothetical protein, at 81,190 to 82,413
_RS18755
HMPREF1058_RS18750: HMPREF1058_RS18750 - hypothetical protein, at 82,419 to 83,000
_RS18750
HMPREF1058_RS18745: HMPREF1058_RS18745 - ATP-binding protein, at 82,984 to 86,637
_RS18745
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1
2 at 81.470 kb on + strand, within HMPREF1058_RS18755 at 81.475 kb on + strand, within HMPREF1058_RS18755 at 81.496 kb on + strand, within HMPREF1058_RS18755 at 81.500 kb on - strand, within HMPREF1058_RS18755 at 81.500 kb on - strand, within HMPREF1058_RS18755 at 81.539 kb on + strand, within HMPREF1058_RS18755 at 81.540 kb on - strand, within HMPREF1058_RS18755 at 81.555 kb on + strand, within HMPREF1058_RS18755 at 81.619 kb on - strand, within HMPREF1058_RS18755 at 81.714 kb on + strand, within HMPREF1058_RS18755 at 82.033 kb on + strand, within HMPREF1058_RS18755 at 82.033 kb on + strand, within HMPREF1058_RS18755 at 82.091 kb on - strand, within HMPREF1058_RS18755 at 82.160 kb on - strand, within HMPREF1058_RS18755 at 82.400 kb on + strand at 82.400 kb on + strand at 82.468 kb on - strand at 82.527 kb on + strand, within HMPREF1058_RS18750 at 82.528 kb on - strand, within HMPREF1058_RS18750 at 82.567 kb on - strand, within HMPREF1058_RS18750 at 82.669 kb on - strand, within HMPREF1058_RS18750 at 82.704 kb on + strand, within HMPREF1058_RS18750 at 82.855 kb on + strand, within HMPREF1058_RS18750 at 82.856 kb on - strand, within HMPREF1058_RS18750 at 82.911 kb on + strand, within HMPREF1058_RS18750 at 82.911 kb on + strand, within HMPREF1058_RS18750 at 82.914 kb on - strand, within HMPREF1058_RS18750 at 82.935 kb on + strand, within HMPREF1058_RS18750 at 82.959 kb on - strand at 83.004 kb on + strand at 83.010 kb on + strand at 83.044 kb on - strand at 83.047 kb on + strand at 83.276 kb on + strand at 83.381 kb on - strand, within HMPREF1058_RS18745 at 83.388 kb on - strand, within HMPREF1058_RS18745 at 83.392 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.413 kb on + strand, within HMPREF1058_RS18745 at 83.414 kb on - strand, within HMPREF1058_RS18745 at 83.517 kb on - strand, within HMPREF1058_RS18745 at 83.856 kb on - strand, within HMPREF1058_RS18745 at 83.984 kb on + strand, within HMPREF1058_RS18745 at 83.984 kb on + strand, within HMPREF1058_RS18745 at 83.985 kb on - strand, within HMPREF1058_RS18745 at 83.985 kb on - strand, within HMPREF1058_RS18745
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 81,470 + HMPREF1058_RS18755 0.23 -1.0 81,475 + HMPREF1058_RS18755 0.23 +2.4 81,496 + HMPREF1058_RS18755 0.25 +0.7 81,500 - HMPREF1058_RS18755 0.25 +0.8 81,500 - HMPREF1058_RS18755 0.25 -1.5 81,539 + HMPREF1058_RS18755 0.29 -0.9 81,540 - HMPREF1058_RS18755 0.29 +0.2 81,555 + HMPREF1058_RS18755 0.30 -1.3 81,619 - HMPREF1058_RS18755 0.35 +0.0 81,714 + HMPREF1058_RS18755 0.43 -0.6 82,033 + HMPREF1058_RS18755 0.69 -0.4 82,033 + HMPREF1058_RS18755 0.69 +1.3 82,091 - HMPREF1058_RS18755 0.74 -0.2 82,160 - HMPREF1058_RS18755 0.79 +0.5 82,400 + +0.6 82,400 + +0.2 82,468 - -0.2 82,527 + HMPREF1058_RS18750 0.19 +1.4 82,528 - HMPREF1058_RS18750 0.19 +0.7 82,567 - HMPREF1058_RS18750 0.25 -1.3 82,669 - HMPREF1058_RS18750 0.43 +1.1 82,704 + HMPREF1058_RS18750 0.49 +1.0 82,855 + HMPREF1058_RS18750 0.75 +1.3 82,856 - HMPREF1058_RS18750 0.75 -1.2 82,911 + HMPREF1058_RS18750 0.85 -0.2 82,911 + HMPREF1058_RS18750 0.85 +1.0 82,914 - HMPREF1058_RS18750 0.85 -0.1 82,935 + HMPREF1058_RS18750 0.89 +0.3 82,959 - -0.0 83,004 + +0.1 83,010 + -0.4 83,044 - -1.5 83,047 + +1.0 83,276 + +0.5 83,381 - HMPREF1058_RS18745 0.11 -0.4 83,388 - HMPREF1058_RS18745 0.11 +0.6 83,392 + HMPREF1058_RS18745 0.11 -0.7 83,407 + HMPREF1058_RS18745 0.12 +0.9 83,407 + HMPREF1058_RS18745 0.12 +0.3 83,407 + HMPREF1058_RS18745 0.12 +0.5 83,413 + HMPREF1058_RS18745 0.12 -0.0 83,414 - HMPREF1058_RS18745 0.12 +1.0 83,517 - HMPREF1058_RS18745 0.15 +0.1 83,856 - HMPREF1058_RS18745 0.24 -0.3 83,984 + HMPREF1058_RS18745 0.27 +1.8 83,984 + HMPREF1058_RS18745 0.27 -0.0 83,985 - HMPREF1058_RS18745 0.27 +0.3 83,985 - HMPREF1058_RS18745 0.27 +0.3
Or see this region's nucleotide sequence