Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18460 and HMPREF1058_RS18455 are separated by 39 nucleotides HMPREF1058_RS18455 and HMPREF1058_RS20210 are separated by 7 nucleotides
HMPREF1058_RS18460: HMPREF1058_RS18460 - glycosyltransferase, at 148,187 to 149,287
_RS18460
HMPREF1058_RS18455: HMPREF1058_RS18455 - hypothetical protein, at 149,327 to 150,259
_RS18455
HMPREF1058_RS20210: HMPREF1058_RS20210 - glycosyltransferase, at 150,267 to 151,298
_RS20210
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 148.364 kb on - strand, within HMPREF1058_RS18460 at 148.364 kb on - strand, within HMPREF1058_RS18460 at 148.403 kb on - strand, within HMPREF1058_RS18460 at 148.409 kb on + strand, within HMPREF1058_RS18460 at 148.475 kb on + strand, within HMPREF1058_RS18460 at 148.578 kb on + strand, within HMPREF1058_RS18460 at 148.623 kb on - strand, within HMPREF1058_RS18460 at 148.625 kb on - strand, within HMPREF1058_RS18460 at 148.708 kb on + strand, within HMPREF1058_RS18460 at 148.728 kb on - strand, within HMPREF1058_RS18460 at 148.730 kb on - strand, within HMPREF1058_RS18460 at 148.730 kb on - strand, within HMPREF1058_RS18460 at 148.796 kb on + strand, within HMPREF1058_RS18460 at 148.821 kb on - strand, within HMPREF1058_RS18460 at 148.899 kb on - strand, within HMPREF1058_RS18460 at 148.924 kb on + strand, within HMPREF1058_RS18460 at 148.927 kb on + strand, within HMPREF1058_RS18460 at 148.937 kb on - strand, within HMPREF1058_RS18460 at 148.938 kb on + strand, within HMPREF1058_RS18460 at 148.938 kb on + strand, within HMPREF1058_RS18460 at 148.938 kb on + strand, within HMPREF1058_RS18460 at 148.938 kb on + strand, within HMPREF1058_RS18460 at 148.949 kb on - strand, within HMPREF1058_RS18460 at 148.994 kb on + strand, within HMPREF1058_RS18460 at 149.002 kb on + strand, within HMPREF1058_RS18460 at 149.002 kb on + strand, within HMPREF1058_RS18460 at 149.002 kb on + strand, within HMPREF1058_RS18460 at 149.002 kb on + strand, within HMPREF1058_RS18460 at 149.003 kb on - strand, within HMPREF1058_RS18460 at 149.067 kb on - strand, within HMPREF1058_RS18460 at 149.067 kb on - strand, within HMPREF1058_RS18460 at 149.175 kb on + strand, within HMPREF1058_RS18460 at 149.175 kb on + strand, within HMPREF1058_RS18460 at 149.176 kb on - strand, within HMPREF1058_RS18460 at 149.182 kb on - strand at 149.187 kb on + strand at 149.357 kb on + strand at 149.621 kb on - strand, within HMPREF1058_RS18455 at 149.713 kb on + strand, within HMPREF1058_RS18455 at 149.715 kb on + strand, within HMPREF1058_RS18455 at 149.715 kb on + strand, within HMPREF1058_RS18455 at 149.715 kb on + strand, within HMPREF1058_RS18455 at 149.715 kb on + strand, within HMPREF1058_RS18455 at 149.716 kb on - strand, within HMPREF1058_RS18455 at 149.750 kb on - strand, within HMPREF1058_RS18455 at 149.752 kb on - strand, within HMPREF1058_RS18455 at 149.775 kb on + strand, within HMPREF1058_RS18455 at 149.798 kb on - strand, within HMPREF1058_RS18455 at 149.851 kb on + strand, within HMPREF1058_RS18455 at 149.853 kb on + strand, within HMPREF1058_RS18455 at 149.959 kb on + strand, within HMPREF1058_RS18455 at 149.961 kb on + strand, within HMPREF1058_RS18455 at 149.962 kb on - strand, within HMPREF1058_RS18455 at 149.962 kb on - strand, within HMPREF1058_RS18455 at 149.985 kb on - strand, within HMPREF1058_RS18455 at 150.002 kb on + strand, within HMPREF1058_RS18455 at 150.012 kb on - strand, within HMPREF1058_RS18455 at 150.206 kb on + strand at 150.206 kb on + strand at 150.207 kb on - strand at 150.207 kb on - strand at 150.210 kb on + strand at 150.319 kb on - strand at 150.378 kb on - strand, within HMPREF1058_RS20210 at 150.512 kb on + strand, within HMPREF1058_RS20210 at 150.527 kb on + strand, within HMPREF1058_RS20210 at 150.527 kb on + strand, within HMPREF1058_RS20210 at 150.528 kb on - strand, within HMPREF1058_RS20210 at 150.531 kb on - strand, within HMPREF1058_RS20210 at 150.572 kb on + strand, within HMPREF1058_RS20210 at 150.574 kb on + strand, within HMPREF1058_RS20210 at 150.575 kb on - strand, within HMPREF1058_RS20210 at 150.575 kb on - strand, within HMPREF1058_RS20210 at 150.575 kb on - strand, within HMPREF1058_RS20210 at 150.575 kb on - strand, within HMPREF1058_RS20210 at 150.577 kb on - strand, within HMPREF1058_RS20210 at 150.577 kb on - strand, within HMPREF1058_RS20210 at 150.659 kb on + strand, within HMPREF1058_RS20210 at 150.660 kb on - strand, within HMPREF1058_RS20210 at 150.685 kb on + strand, within HMPREF1058_RS20210 at 150.693 kb on + strand, within HMPREF1058_RS20210 at 150.694 kb on - strand, within HMPREF1058_RS20210 at 150.694 kb on - strand, within HMPREF1058_RS20210 at 150.712 kb on + strand, within HMPREF1058_RS20210 at 150.763 kb on + strand, within HMPREF1058_RS20210 at 150.763 kb on + strand, within HMPREF1058_RS20210 at 150.764 kb on - strand, within HMPREF1058_RS20210 at 150.824 kb on + strand, within HMPREF1058_RS20210 at 150.824 kb on + strand, within HMPREF1058_RS20210 at 150.868 kb on - strand, within HMPREF1058_RS20210 at 150.960 kb on + strand, within HMPREF1058_RS20210 at 150.961 kb on - strand, within HMPREF1058_RS20210 at 151.036 kb on + strand, within HMPREF1058_RS20210 at 151.037 kb on - strand, within HMPREF1058_RS20210 at 151.085 kb on + strand, within HMPREF1058_RS20210 at 151.141 kb on + strand, within HMPREF1058_RS20210 at 151.183 kb on - strand, within HMPREF1058_RS20210 at 151.189 kb on - strand, within HMPREF1058_RS20210 at 151.189 kb on - strand, within HMPREF1058_RS20210 at 151.194 kb on + strand, within HMPREF1058_RS20210 at 151.194 kb on + strand, within HMPREF1058_RS20210 at 151.199 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 148,364 - HMPREF1058_RS18460 0.16 +0.4 148,364 - HMPREF1058_RS18460 0.16 +0.8 148,403 - HMPREF1058_RS18460 0.20 -0.4 148,409 + HMPREF1058_RS18460 0.20 +2.0 148,475 + HMPREF1058_RS18460 0.26 +0.7 148,578 + HMPREF1058_RS18460 0.36 +1.0 148,623 - HMPREF1058_RS18460 0.40 -0.3 148,625 - HMPREF1058_RS18460 0.40 -0.7 148,708 + HMPREF1058_RS18460 0.47 -2.0 148,728 - HMPREF1058_RS18460 0.49 -1.9 148,730 - HMPREF1058_RS18460 0.49 +0.1 148,730 - HMPREF1058_RS18460 0.49 -1.1 148,796 + HMPREF1058_RS18460 0.55 +0.3 148,821 - HMPREF1058_RS18460 0.58 +0.3 148,899 - HMPREF1058_RS18460 0.65 +0.4 148,924 + HMPREF1058_RS18460 0.67 -0.4 148,927 + HMPREF1058_RS18460 0.67 +0.2 148,937 - HMPREF1058_RS18460 0.68 +1.3 148,938 + HMPREF1058_RS18460 0.68 -1.0 148,938 + HMPREF1058_RS18460 0.68 +0.5 148,938 + HMPREF1058_RS18460 0.68 +0.6 148,938 + HMPREF1058_RS18460 0.68 -0.4 148,949 - HMPREF1058_RS18460 0.69 -0.5 148,994 + HMPREF1058_RS18460 0.73 -0.6 149,002 + HMPREF1058_RS18460 0.74 -1.2 149,002 + HMPREF1058_RS18460 0.74 +0.4 149,002 + HMPREF1058_RS18460 0.74 -0.5 149,002 + HMPREF1058_RS18460 0.74 +0.3 149,003 - HMPREF1058_RS18460 0.74 +0.1 149,067 - HMPREF1058_RS18460 0.80 +0.6 149,067 - HMPREF1058_RS18460 0.80 +0.3 149,175 + HMPREF1058_RS18460 0.90 -0.1 149,175 + HMPREF1058_RS18460 0.90 +0.8 149,176 - HMPREF1058_RS18460 0.90 +1.6 149,182 - -0.4 149,187 + +1.1 149,357 + +0.1 149,621 - HMPREF1058_RS18455 0.32 +0.2 149,713 + HMPREF1058_RS18455 0.41 +1.1 149,715 + HMPREF1058_RS18455 0.42 +0.4 149,715 + HMPREF1058_RS18455 0.42 +0.6 149,715 + HMPREF1058_RS18455 0.42 -0.2 149,715 + HMPREF1058_RS18455 0.42 -0.4 149,716 - HMPREF1058_RS18455 0.42 +2.4 149,750 - HMPREF1058_RS18455 0.45 +3.0 149,752 - HMPREF1058_RS18455 0.46 +1.6 149,775 + HMPREF1058_RS18455 0.48 +0.8 149,798 - HMPREF1058_RS18455 0.50 +0.8 149,851 + HMPREF1058_RS18455 0.56 -0.8 149,853 + HMPREF1058_RS18455 0.56 +0.6 149,959 + HMPREF1058_RS18455 0.68 +0.7 149,961 + HMPREF1058_RS18455 0.68 -0.6 149,962 - HMPREF1058_RS18455 0.68 +1.1 149,962 - HMPREF1058_RS18455 0.68 +1.0 149,985 - HMPREF1058_RS18455 0.71 +1.3 150,002 + HMPREF1058_RS18455 0.72 -1.5 150,012 - HMPREF1058_RS18455 0.73 +1.4 150,206 + -0.7 150,206 + +1.0 150,207 - +0.0 150,207 - +1.2 150,210 + -0.9 150,319 - +0.9 150,378 - HMPREF1058_RS20210 0.11 +0.8 150,512 + HMPREF1058_RS20210 0.24 +1.8 150,527 + HMPREF1058_RS20210 0.25 -0.4 150,527 + HMPREF1058_RS20210 0.25 +0.1 150,528 - HMPREF1058_RS20210 0.25 -0.1 150,531 - HMPREF1058_RS20210 0.26 +1.1 150,572 + HMPREF1058_RS20210 0.30 +0.2 150,574 + HMPREF1058_RS20210 0.30 -1.3 150,575 - HMPREF1058_RS20210 0.30 -0.9 150,575 - HMPREF1058_RS20210 0.30 -0.0 150,575 - HMPREF1058_RS20210 0.30 +1.1 150,575 - HMPREF1058_RS20210 0.30 -0.4 150,577 - HMPREF1058_RS20210 0.30 -2.5 150,577 - HMPREF1058_RS20210 0.30 -0.6 150,659 + HMPREF1058_RS20210 0.38 +0.5 150,660 - HMPREF1058_RS20210 0.38 -1.1 150,685 + HMPREF1058_RS20210 0.41 -0.8 150,693 + HMPREF1058_RS20210 0.41 +1.2 150,694 - HMPREF1058_RS20210 0.41 +0.6 150,694 - HMPREF1058_RS20210 0.41 +0.1 150,712 + HMPREF1058_RS20210 0.43 +3.4 150,763 + HMPREF1058_RS20210 0.48 +1.7 150,763 + HMPREF1058_RS20210 0.48 -1.9 150,764 - HMPREF1058_RS20210 0.48 +0.4 150,824 + HMPREF1058_RS20210 0.54 +0.6 150,824 + HMPREF1058_RS20210 0.54 -1.5 150,868 - HMPREF1058_RS20210 0.58 -1.3 150,960 + HMPREF1058_RS20210 0.67 -0.2 150,961 - HMPREF1058_RS20210 0.67 -1.2 151,036 + HMPREF1058_RS20210 0.75 +0.1 151,037 - HMPREF1058_RS20210 0.75 +0.8 151,085 + HMPREF1058_RS20210 0.79 -1.0 151,141 + HMPREF1058_RS20210 0.85 -0.3 151,183 - HMPREF1058_RS20210 0.89 -0.2 151,189 - HMPREF1058_RS20210 0.89 +1.1 151,189 - HMPREF1058_RS20210 0.89 +0.3 151,194 + HMPREF1058_RS20210 0.90 -0.9 151,194 + HMPREF1058_RS20210 0.90 -0.5 151,199 + +1.0
Or see this region's nucleotide sequence